Xanthomonas campestris pv. campestris ATCC 33913: XCC0645
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Entry
XCC0645 CDS
T00083
Symbol
pel
Name
(GenBank) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc00040
Pentose and glucuronate interconversions
xcc01100
Metabolic pathways
xcc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
XCC0645 (pel)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
XCC0645 (pel)
Enzymes [BR:
xcc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
XCC0645 (pel)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
AAM39961
UniProt:
Q8PCR8
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All DBs
Position
769940..771157
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AA seq
405 aa
AA seq
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MQCCHGERVAHATCHCITHSREFNTMSTASTVVGRTVVGVVLGAALLSGTAYAADPALEV
ATTGWATQNGGTKGGSKAAAADIYTVTNAAQLKAALKAKAGSNGRIIKIKGVIDISEGKA
YTKTSDMKSRGRLDVPTKTSLIGVGTNAEIREGFFYVKANDVIVRNLTIENPWDPEPVWD
ADDGDAGNWNSEYDGLTVEGASNVWVDHVTFTDGRRTDDQNGTANGRPKQHHDGAMDVKK
GANYVTISYSVFKSHEKNSLIGSSDSASSTDSGKLKVTIHNTLFQDIAARAPRVRFGQVH
LYNNYHLGSTSNKVYPFSHAHGVGKESKIFSENNAFDISGVSSCTKIAGDYKGSVYRDQG
SLINGKALTCSWNSNIGWKPPYTYNILPANKVAADVKAKAGAGKL
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgcagtgctgtcacggggagcgcgtcgcgcatgcgacgtgtcattgcatcactcattca
agagaattcaacaccatgtcgactgcatcgacagttgtgggtcgtacggttgtgggcgtc
gttctgggcgctgcgttgttgtcgggcaccgcgtatgcggcagaccctgcactggaagtg
gccaccaccggctgggccacccagaacggcggcaccaagggaggctccaaggcggcggcg
gcagacatttacaccgtcaccaacgcggcccagctcaaggcggccttgaaggccaaggcc
ggcagcaacggccgcatcatcaagatcaagggtgtcatcgacatcagcgaaggcaaggcc
tacaccaagacctcggacatgaagagccgtggtcgcctggatgtgccgaccaagaccagc
ctgatcggcgtcggcaccaatgccgaaatccgcgaaggctttttctacgtcaaggccaac
gacgtcattgtgcgcaatctcaccatcgagaatccgtgggatccggagccggtgtgggat
gccgacgacggcgatgcaggcaactggaactccgaatacgacgggttgaccgtggaaggc
gccagcaacgtgtgggtggaccatgtgaccttcaccgacggccgccgcaccgatgatcag
aacggcaccgccaacggccgccccaagcagcatcacgatggtgcgatggacgtcaagaag
ggcgccaactacgtgaccatttcgtattcggtgttcaagtcgcacgagaagaacagcctg
atcggctccagcgacagtgcatcgagcaccgactccggcaagctcaaggtcaccatccac
aacaccttgttccaggacattgccgcacgtgcgccgcgcgtacgcttcggccaggtgcat
ctgtacaacaactaccacctcggcagcaccagcaataaggtgtacccgttctcgcatgcg
catggcgtgggcaaggaatcgaagatcttctccgagaacaatgccttcgacatcagcggc
gtgagcagctgcaccaagattgctggcgactacaagggcagcgtgtaccgtgaccagggc
tcgttgatcaacggcaaggcactgacctgcagctggaacagcaacatcggctggaagccg
ccgtatacctacaacatcctgccggccaacaaggtggcagcggacgtcaaggccaaggct
ggcgccggcaagctgtaa
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