Xanthomonas campestris pv. campestris ATCC 33913: XCC1551
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Entry
XCC1551 CDS
T00083
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
XCC1551 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcc03400
]
XCC1551 (sbcB)
Enzymes [BR:
xcc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
XCC1551 (sbcB)
DNA repair and recombination proteins [BR:
xcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
XCC1551 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XCC1551 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XCC1551 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AAM40846
UniProt:
Q8PAD4
LinkDB
All DBs
Position
complement(1811778..1813223)
Genome browser
AA seq
481 aa
AA seq
DB search
MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV
TGITPQHALREGVNEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER
EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSD
VYATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAV
LPLSRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNK
APALVAWQHLRSDDFQRLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVNDA
DASLYDGFLAEGDKRLLTQVRSSAPGELGAMEARFRDPRLIELLFRYRARNWPQTLSPHE
HQRWNDYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHPDDATKQSLLDQLAAWGSDLQRT
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacagttttctcttctacgacctggaaaccttcggccaggatccgcgccgcacc
cgcatcgcgcagttcgcggccgtgcgcaccgatgcgcaactgcgcgtgatcgaagagccg
atcagtttcttcgtgcagccggccgacgatctgttgccctcgccctacgccaccatggtc
accggcatcaccccgcagcacgcgctgcgtgagggcgtgaacgaggccgaggcattcgcg
cgcattgccgagcagatgggccgcccgcagacctgcacgctgggctacaactcgatccgc
ttcgatgatgagttcgtacgctgcggcctgttccgcaatttctacgatccctatgagcgt
gagtggcgtggcggcaactcgcgttgggatctgctcgacgtgctgcggttggtgcatgca
ctgcgcccggacggcatcgtgtggccgcagcgcgaggatggcgccacctcgttcaaactg
gagcatctggccgatgccaatgccgtgcgcgaaggcgatgcacatgaagccctgtcggac
gtgtacgccaccatcggcatggcgcgcaagttccagcagagccaacccaaattgtgggac
tacgcgctgcgtctgcgcgacaagcgctttgctgccagcttgctggacgtgattgcgatg
cagccggtgctgcacatctcgcagcgctacccggccacgcgcctgtgcgcggccgcggtg
ttgccgctgagccgtcacccgcgcatcgacagccgcgtgatcgtgttcgatctggacggc
gacccggatgcgttgttgcgcctgagcccggacgagatcgccgaccgcctgtacattcgc
gccgccgatctgcccgaaggcgagcagcgcatcccgctcaaggaagtgcatctgaacaag
gcccccgccctggtggcctggcagcatctgcgtagcgatgacttccagcgcctgggcgtg
gaccgcgccgcggtggaagccaaggccgcgcggttgcgcgaactgggcccggagctggca
gaaaaagtacgccaggtctacggcgccgagcgcgccggggcagcagcggtcaacgacgcc
gacgcctcgctgtatgacggcttcctggccgagggcgacaagcgcctgctgacgcaggtg
cgcagcagcgcgccgggcgaactgggcgcaatggaagcgcgcttccgcgacccacgcctg
atcgaactgctgttccgctaccgggcgcgcaactggccgcagacactttcgccgcacgag
caccaacgctggaacgattatcgtcggcaacgtctgctggaagaccgcggcctgggcgaa
gtcacgctggagcagttctacgcgcagatcgccgatttacggcttgctcaccccgacgat
gctaccaagcaatccctgctcgaccagctcgccgcctggggttcggacctccaacgcacg
ctatga
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