Xanthomonas campestris pv. campestris ATCC 33913: XCC1858
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Entry
XCC1858 CDS
T00083
Symbol
rpfB
Name
(GenBank) RpfB protein
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc00061
Fatty acid biosynthesis
xcc00071
Fatty acid degradation
xcc01100
Metabolic pathways
xcc01212
Fatty acid metabolism
xcc02024
Quorum sensing
xcc04146
Peroxisome
Module
xcc_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
XCC1858 (rpfB)
00071 Fatty acid degradation
XCC1858 (rpfB)
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
XCC1858 (rpfB)
09145 Cellular community - prokaryotes
02024 Quorum sensing
XCC1858 (rpfB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
xcc01004
]
XCC1858 (rpfB)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xcc04147
]
XCC1858 (rpfB)
Enzymes [BR:
xcc01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
XCC1858 (rpfB)
Lipid biosynthesis proteins [BR:
xcc01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
XCC1858 (rpfB)
Exosome [BR:
xcc04147
]
Exosomal proteins
Exosomal proteins of breast milk
XCC1858 (rpfB)
Exosomal proteins of breast cancer cells
XCC1858 (rpfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
AAM41147
UniProt:
Q8P9K5
LinkDB
All DBs
Position
complement(2163347..2165029)
Genome browser
AA seq
560 aa
AA seq
DB search
MSQARPWLQSYPAGVAAEIDLEQFRTVAEVFATSVARFADRPAYHSFGKTITYREADQLV
DQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGILRAGLTVVNVNPLYTPRELKHQLI
DSGSSVLVVIDNFGTTVQQVIADTQVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEY
RINGAIRFRDALALGRKHRVPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQA
HQWLAGTGKLEEGHEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELK
KTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEA
YGLTETSPAACINPMDLVDYNGSIGLPIPSTDACIKDDDGKVLALGEIGELCIKGPQVMK
GYWKKADETAKVMDAEGWLHTGDIARMDERGFVYIVDRKKDMILVSGFNVYPNEIEDVIA
TMPGVLEVAAVGVPDEKSGEIVKVVIVKKDQALTAEDVKAHCRTNLTGYKQPRVIEFRKE
LPKTNVGKILRRELRDAAKA
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaggcacgtccttggttgcaaagttatccggccggagtggccgcggagatcgat
ctggagcagttccgcaccgtggcggaggttttcgccacctcggtggcgcgcttcgctgat
cgtcccgcgtatcacagcttcggcaagaccattacctaccgcgaagcagatcagctggtc
gaccagttcgcggcctatctgctcggcgagttgcagctgaaaaaaggcgaccgcgtcgcc
ttgatgatgcccaactgcctgcaatacccgattgccaccttcggcatcctgcgcgccggt
ctgaccgtggtgaacgtcaacccgctctacaccccgcgcgagctcaagcaccagttgatc
gactcgggctccagcgtgctggtggtcatcgacaacttcggcaccactgtgcagcaagtg
atcgccgacacgcaggtcaagcaggtcatcaccaccggcctgggcgacatgctcgggttc
ccgaaagccgcactggtcaactttgtcgtcaagtacgtcaagaagctggtgccggagtac
cgcatcaacggcgcgatccgcttccgcgacgcgctggcactgggccgcaagcaccgcgtc
ccgaccctgcagatcgagccggacgacatcgcctttttgcagtacaccggcggcaccacc
ggcgtggccaagggcgcgatgctgacccaccgcaacctggtcgccaacatgcagcaggcg
caccagtggctggccggcaccggcaagctggaagaaggccacgaggtggtgatcaccgcg
ctgccgctgtaccacatcttcgcgttgacggcgaacggcctggtcttcatgaagatcggc
ggctgcaaccacctgatcagcaacccgcgcgacatgccgggcttcgtcaaggaactcaag
aagacccgcttcaccgcgtttaccggcgtcaatacgctgttcaatggcttgctcaatacg
cccggcttcgatcagatcgacttttcgtcgttgaagatgaccctcggcggcggcatggca
gtccagcgctcggtcgccgaacgctggaagcaggtgaccggcctgactctggtcgaggct
tacggcctgaccgagacctcgcccgccgcctgcatcaacccgatggatctggtcgactac
aacggctcgatcggcctgccgattccgtccaccgatgcctgcatcaaggacgacgacggc
aaggtgctggcgctgggcgagatcggcgagctgtgcatcaagggcccgcaggtgatgaag
ggctattggaagaaggccgacgagaccgccaaggtcatggacgccgaaggctggctgcac
accggcgacatcgcgcgcatggacgaacgtggcttcgtctatatcgtcgaccgcaagaag
gacatgatcctggtgtccggcttcaacgtgtaccccaacgagatcgaagacgtcatcgcg
acgatgccgggcgtgctcgaagtggccgcagtcggcgtgccggatgaaaagtccggcgaa
atcgtcaaggtggtgatcgtcaagaaagaccaggccctgaccgccgaggacgtaaaggcg
cactgccgcaccaacctgaccggctacaagcagccgcgcgtgatcgagttccgcaaggaa
ttgccgaagaccaacgtcggcaagatcctgcgtcgcgaattgcgggatgcggccaaggca
tag
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integrated database retrieval system
