Xanthomonas campestris pv. campestris ATCC 33913: XCC2507
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Entry
XCC2507 CDS
T00083
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCC2507 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcc03019
]
XCC2507 (pnp)
03016 Transfer RNA biogenesis [BR:
xcc03016
]
XCC2507 (pnp)
Enzymes [BR:
xcc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
XCC2507 (pnp)
Messenger RNA biogenesis [BR:
xcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XCC2507 (pnp)
Transfer RNA biogenesis [BR:
xcc03016
]
Prokaryotic type
tRNA degradation factors
XCC2507 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
S1_2
DUF7680
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AAM41781
UniProt:
Q8P7V1
LinkDB
All DBs
Position
complement(2978781..2980895)
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AA seq
704 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKTAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFNGPIGAAKVGYKNGEYILNPTITELKDSQLELVVAG
TANAVLMVESEAALLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSTWVAPAKNTA
LISALKEAVGTQLAGAFQVRDKLQRRDAISAIKKDVLESLAGRVASEGWSSAELSKEFGE
LEYHTMRDSVLETKVRIDGRALDTVRPISVQAGVLPRTHGSALFTRGETQAIVVTTLGTA
RDGQVIDAVAGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEDDRFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMSK
ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVPASAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcaccctggagacgggc
gaagtcgctcgccaggcgagcggtgccgtcatcgtcaagatggacgacaccgtactgctg
gtcaccgccgtcgccgccaagaccgcgcgcgaagggcaggacttcttccccctgacggtt
gactatcaggagaagttctatgccggcggccgcatcccgggcggcttcttcaagcgcgaa
ggacgtgcgaccgagaaggaaacgttgatctcgcgcctgatcgatcgtccgatccgtccg
ctgttcccggaggactacaagaacgaagtgcagatcatcgccacggtgatgtcgatgaac
ccggacatcgacggcgatatcgccgcgctgatcggtgcgtcggctgcgctgtcgttggcc
ggtacccccttcaacggcccgatcggcgccgccaaggtgggctacaagaacggcgaatac
attctcaacccgaccatcaccgagctgaaggattcgcagcttgagctggttgtggccggt
acggcgaacgccgtgctgatggtggagtcggaagcggcgctgctgtcggaagaagtgatg
ctgggcgcggtcacctttggtcatcgcgagatgcagaaggtcatcaacatcatcaacgaa
ctgaccgtcgaagccggcaccaagcccagcacctgggtggccccggccaagaacaccgcg
ctgatcagcgcgttgaaggaagcggttggcacccagctggcgggtgccttccaggtgcgc
gacaagctgcagcgtcgcgacgccatttcggcgatcaagaaggacgtgctcgagtcgctg
gcaggccgcgtggcttccgaaggctggagctcggccgagctgtcgaaggaattcggcgag
ctggaataccacaccatgcgtgactcggtgctggagaccaaggtgcgtatcgacggccgt
gcactggacaccgtgcgcccgatctcggtacaggccggcgtgctgccgcggacccatggc
tcggcgctgttcacccgcggcgagacgcaggcgatcgtggtcaccacgctgggcaccgcc
cgcgacggccaggtgatcgacgcggtcgctggcgagtacaaggaaaacttcctgttccat
tacaacttccctccgtattcggtgggcgagtgcggccgctttggcgcgccgaagcgtcgc
gagatcggccacggccgtctggccaagcgcggcgtgttggccgtgatgccgagcctggaa
gaattcccgtacaccatccgcgttgtctcggaaatcaccgagtccaacggttcctcgtcg
atggcttcggtgtgcggctcctcgctcgcactgatggacgccggcgtgccggtcaaggca
ccggtggcgggtatcgccatgggcctggtgaaggaagacgaccgcttcgtggtgctgtcc
gacatcctgggggacgaagatcacctgggcgacatggacttcaaggtggccggtactgct
gaaggcgtgtccgcgctgcagatggacatcaagatcgaaggcattaccgaagagatcatg
aagcaggcactgcagcaggccaaggctggccgtctgcacatcctgggcgagatgtccaag
gcgctgaccaccccgcgtcaggagctgagcgactacgcgccgcgcctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggctcgaccatccaggcgatc
accaaggaaaccgggacgcagatcgatatccaggacgacggcacgatcatcattgcttcg
gtcaacgcgattgccgcgcaagctgcgaagtcgcgcatcgagcagatcacctcggacgtg
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtg
accatcctgccgggcaaggatggcctggtacacgtgtcgcagatttccagcgagcgcgtg
gagaaggtcggcgacaagttgaaggaaggcgatctggtccgcgtcaaggtgctggaagtg
gacaagcagggccgcatccgtctgtcgatcaaggcagtggaagaaggcgaaggcgtgcct
gcatcggctgagtaa
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integrated database retrieval system
