Xanthomonas campestris pv. campestris ATCC 33913: XCC2698
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Entry
XCC2698 CDS
T00083
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XCC2698 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcc03400
]
XCC2698 (mfd)
Enzymes [BR:
xcc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XCC2698 (mfd)
DNA repair and recombination proteins [BR:
xcc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XCC2698 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
AAA_30
ERCC3_RAD25_C
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AAM41970
UniProt:
Q8P7B3
LinkDB
All DBs
Position
3196467..3199934
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AA seq
1155 aa
AA seq
DB search
MPSPTFPSPPLPKSGQLRAYWRAPSSPTALAWSIARAAEAHAGPVLVIARDNQSAHQIEA
DLHALLGDASALPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVTVPVQTL
LQQLAPLSYIVGGSFDLTVGQRLDLDAEKRCLESAGYRNVPQVMDPGDFAVRGGLLDVFP
MGADTPLRIELLDEDIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLACLRE
RFDVDTRRSALYQDLKSGIAPSGVEYYLPMFFSKTATLFDYLDTRVLPLIATGVSNAADA
FWLQAQNRYEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWPADHPRIDEAAPLG
DQPLPPLPVAAKDAPAGQALASFLGHYPGRVLVAADSAGRREALMEVLAAAQLKPDVVAD
LPAFLAATKLRFGITVAPLEDGFALDTPQIAVLTERQLFPERANQPRRTRRVGREPEAII
RDLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISR
YSGASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMYE
PFAAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQ
VAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTH
RLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLR
DLSIIATPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDVESIVRMQRDLSE
LVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRF
GLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFTLATHDLE
IRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEVRGAEVELHVAS
LIPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDPVKHLFAIAELKLQA
NALGVRKLDLGENGGRLVFEAKPSIDPMTVIQMIQKQPKIYTMDGPDKLRIKLPLPEAAD
RFKAARGLLTALAPR
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgcctaccttcccttctccgccgctgcccaagtccggccagctccgcgcctac
tggcgcgctccgtcgtctccgacggccctggcctggtcgattgcacgcgctgccgaagcg
catgccggcccggtgctggtgattgcccgcgacaaccagagcgcgcatcagatcgaagcc
gatctgcacgccctgctgggtgacgcgtccgcgctgccggtggtgccgtttcccgattgg
gaaaccctgccctacgaccagttcagcccgcacccggagatcatcagccagcgcctggcg
gccctgcatcgcttgcccggtttgacccgtggcgtggtgaccgtgccggtgcagaccttg
ctgcagcagctcgcgccgctgagctacatcgtcggtggcagcttcgatctcacggttggc
cagcgcctggatctggacgcggaaaaacgctgcctggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccgggcgatttcgcggtgcgcggcggcctgctggatgtatttccg
atgggcgccgacaccccgttgcgcatcgagctgctggacgaggatatcgattccatccgc
gccttcgacccggaatcgcagcgctcgctggacaaggtggacgcggtcaagatgctgccc
ggccgcgaagtgccgatggacgatgccagcgtggagcgtgtgctcgcctgcctgcgcgaa
cgcttcgacgtggatacgcggcgcagcgcgctgtatcaggatctgaagtccggcatcgca
ccgtcgggcgtcgagtattacctgccgatgttcttcagcaagaccgccacgctgttcgat
tatctggacacgcgcgtgctgccgctgatcgccaccggcgtctccaatgccgccgatgcc
ttctggctgcaggcgcaaaaccgctacgagcagcgccgccacgatgtggaacgcccgctg
ctgccgcccgatgagctgtaccagtcaccggatgccttgcgcgagcggctcaacaagctg
gcgcgcatcgaagtgtggccggccgaccatccgcgtatcgacgaggccgcgccgctgggc
gaccagccgttgccgccgctaccggtcgccgccaaggatgcgcccgccgggcaggccctg
gcctcgttcctgggccactacccgggccgggtgctggtagccgccgattcggccggccgc
cgtgaagccttgatggaagtactggccgccgcgcagttgaagccggacgtcgtggccgac
ctgcccgcgttcctggccgcgaccaaactgcgcttcggcatcaccgtggcgccgctggaa
gacggctttgcattggacacgccgcagattgcggtgctgaccgagcgccagttgttcccg
gagcgggccaaccaaccgcgccgcacgcgccgcgtgggccgcgagccggaagcgatcatc
cgcgacctgggcgagctctccgaaggcgcgccgatcgtgcatgaagaccacggcgtgggc
cgctaccgcggcctcatcgtgctcgacgccggcggcatgcctggcgagtttctggaaatc
gaatacgccaagggcgaccggctgtatgtgccggtggcgcagctgcacttgatcagccgc
tattccggtgcctcggccgacacagcgccgctgcattcgctgggtggcgagcagtggacc
aaggccaagcgcaaggccgccgaaaaagtgcgcgatgtcgccgccgaattgctggaaatc
caggcgcgccgccgcgcgcgcgcaggcctggccctgcaggtggaccgcgcgatgtacgaa
ccattcgcggcgggctttccgttcgaggaaaccaccgaccagttggccgcgatcgatgcc
accttgcgcgatctgggcagcagccagccgatggaccgcgtggtctgcggcgatgtcggc
ttcggcaagaccgaggtcgcggtgcgcgccgcgttcgccgcggccagtgccggcaagcag
gtcgccgtgctggtgccgaccacgctgctggccgaacagcattaccgcaacttccgcgac
cgcttcgccgactacccgatgaaggtggaagtgctgtcgcgcttcaagagcaccaaggag
atcaaggccgagctggaaaaagtggccagcggcgatatcgacgtgatcatcggcacgcac
cgactgctgcagccggacgtgaagttcaaggatctcggcctggtcgtggtcgacgaagaa
cagcgcttcggcgtgcgtcagaaagaagcgctcaaggcgatgcgcgccaacgtgcatcta
ctcacgctcaccgccacgccgatcccgcgcacgctcaacatggccatggccgggctgcgc
gatctgtccatcatcgctacgccgccgccgaaccggctcgcggtgcagaccttcatcacc
gcctgggacaacaccctgctgcgcgaggcgttccagcgcgaactcagtcgcggtggccag
ctgtatttcctgcacaacgatgtggaaagcatcgtgcgcatgcagcgcgacctctccgag
ctggtgccggaagcgcgcatcggcatcgcgcatgggcagatgcccgagcgcgagctggaa
cgggtgatgctggatttccagaagcagcgcttcaacgtgctgctgtcgaccacgatcatc
gaatcgggcatcgacattcccaacgccaacaccatcatcatcaatcgtgccgatcgcttt
ggcttggcacagttgcatcagttgcgtggccgcgtcggtcgctcgcatcaccgcgcctac
gcatatctggtggtgccggaccgccgctcgatgacctccgatgcagaaaagcgcctggaa
gcgattgcctccatggacgaactgggcgccggcttcaccctggccacgcacgatctggag
attcgtggtgccggcgagctgctgggcgaggaccagagcgggcagatggccgaggtgggt
ttcagcctgtacaccgaactgctggaacgcgcggtgcgcagcatccgccagggcaagctg
cccgacctggatgccggcgaagaagtgcgcggcgccgaggtggaactgcacgtggcctcg
ctgattcccgaggactacctgccggatgtacacacgcgcctgacgctgtacaagcgcatt
tccagtgcccgcgacagcgatgccttgcgcgagttgcaggtggaaatgatcgaccgcttc
ggcctgctgccggacccggtcaagcacctgttcgcgatcgccgagctcaagttgcaggcc
aatgccttgggcgtgcgcaagctggatcttggcgagaatggcggccggctggtgttcgag
gcaaagccgtcgatcgacccgatgaccgtgatccagatgatccagaagcagccgaagatc
tacaccatggacggcccggacaaactgcgcatcaagctgccgttgcccgaggctgccgac
cgcttcaaggcggcacgtgggctgttgacggccctggcaccgcgctga
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