Xanthomonas campestris pv. campestris ATCC 33913: XCC3736
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Entry
XCC3736 CDS
T00083
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XCC3736 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcc03021
]
XCC3736 (rpoD)
Transcription machinery [BR:
xcc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XCC3736 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AAM42993
UniProt:
Q8P4H2
LinkDB
All DBs
Position
complement(4442015..4443889)
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AA seq
624 aa
AA seq
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MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIISMINGMGIDVHE
VAPDAETLLLNDGNTGNREVDDTAAEEAAAALTALDTEGGRTTDPVRMYMREMGTVELLT
REGEIAIAKRIEEGLSQVQAALGTFPLSTELLLSDYEAHKEGKKRLAEIVVGFNDLIEEA
DAAAAALAAAGPVAVDEDAVDEDADEDGDDDAAEEEAGPTGPDPVEVATRMENLANEYAK
FKKAYVKYGAEHKNVAKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLHL
ATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIVSEQQGSIEMEKA
NYLTLAEIKDISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI
GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM
LQQFGREATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVES
PIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI
EAKALRKLRHPSRSEQLRSFLDID
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccagcaatccgacatcaagctactgatcagcaagggcctg
gaacagggctatctgacctacgccgaagtcaatgaccacctgcccgacgacctggtcgac
ccggagcagatcgaagacatcatcagcatgatcaacggcatgggcatcgatgtccatgaa
gttgcccccgatgctgaaaccctgctgctcaacgatggcaacaccggcaaccgcgaggtt
gacgacaccgctgccgaagaagccgccgccgcgctgaccgcgctggacaccgaaggtggt
cgcaccaccgacccggtgcgcatgtatatgcgcgaaatgggcacggtcgagctgctgacc
cgcgaaggcgaaatcgccatcgccaagcgtatcgaagagggcctgagccaggtccaggcc
gcactgggtacgttcccgctgtcgaccgagctgctgctgtccgattacgaagcgcacaag
gaaggcaagaagcgcctggccgagatcgtggtcggcttcaacgacctgatcgaagaagcc
gacgctgccgctgcagcgctggccgctgccggcccggtcgccgttgacgaagatgcggtg
gacgaagacgcagacgaagacggcgatgacgacgctgccgaggaagaagccggcccgacc
ggtccggacccggtggaagttgccacgcgcatggagaacctggccaacgagtacgccaag
ttcaagaaggcctacgtcaagtatggcgccgagcacaagaatgtggccaaggcgcgcgaa
gacatggccgccatcttcaccacactcaagctgccgctgccgctgaccgatgcgctggtc
acccagttgcgtggcgtggtcaacggcatcaaggaccacgagcgcaaggtgctgcacctg
gcgaccaccgtggcgcgcatgccgcgcaaggacttcatccgttcgtgggaaggcaaccag
accaacctggaatgggtggaagacgcactcaagcgcaagcagaagtggtcgtcggcgctg
cgcgacgtcaaggaccagatcgtctccgagcagcagggttcgatcgagatggaaaaggcg
aactacctcaccctggccgagatcaaggacatcagccgtgcgatggcctacggcgaagcc
aaggcgcgcaaggccaagaaggaaatggtcgaggccaacctgcgtctggtcatctccatc
gccaagaagtacaccaaccgtggcctgcagttcctcgacctcatccaggaaggcaacatc
ggcctgatgaaggccgtggacaagttcgaataccgtcgcggttacaagttctccacgtat
gccacgtggtggatccgtcaggccatcacccgttcgatcgccgatcaggcgcgcaccatc
cgtattccggtgcacatgatcgaaacgatcaacaagttgaaccgcatttcccgccagatg
ctccagcagttcggccgtgaggccacgccggaggagctggccaaggaaatggacatgccc
gaggacaagatccgcaaggtgatgaaaatcgccaaggaaccgatctcgatggaaaccccg
atcggcgacgacgaggattcgcatctgggcgatttcatcgaggacaccaacgtggagtcc
ccgatcgacaacaccaccaacatcaatctctccgagacggtgcgggacgtgttggccggc
ctgaccccgcgggaagccaaggtgctgcgcatgcgcttcggtatcgacatgaacaccgat
cacacgctggaagaggtcggcaagcagttcgatgtcacgcgtgagcggattcgccagata
gaggccaaggcgttgcgcaagctgcgtcacccgagccgttcggaacagctgcggtcgttc
ctggacatcgactga
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