Xanthomonas campestris pv. campestris ATCC 33913: XCC3778
Help
Entry
XCC3778 CDS
T00083
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Pathway
xcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCC3778 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcc03021
]
XCC3778 (rho)
03019 Messenger RNA biogenesis [BR:
xcc03019
]
XCC3778 (rho)
Transcription machinery [BR:
xcc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
XCC3778 (rho)
Messenger RNA biogenesis [BR:
xcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XCC3778 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
OB_RNB
S1CSD-TOTE-2
Fungal_virus_P2_C
Mor
Spore_III_AA
AAA_22
ResIII
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
AAM43478
UniProt:
Q8P4D2
LinkDB
All DBs
Position
4490489..4491769
Genome browser
AA seq
426 aa
AA seq
DB search
MPEGFPAYSLSDLKRMPAQKLLDIADQLNIQEGVARARKQDVIFALLKVLTRHGEGVAAD
GVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFA
LSIVDTINGEPLEASKNKVLFENLTPLFPRRRFRLERGDGSTEDITGRILDLMAPQGKGQ
RALIVSPPKAGKTMMMQQVATAITTNHPEVHMIVLLIDERPEEVTEMQRTVRGEVISSTF
DEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAN
ALHRPKRFFGAARNVEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNSEVHLNRRITEK
RVYPAIDINRSGTRREDLLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKMKTTKSNDEF
FSSMKR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
gtgccggaaggcttcccggcgtactcgctgagcgacctcaagcggatgccggcgcagaag
ctgctggatatcgccgatcagctcaacatccaggaaggcgtggcccgcgcacgcaagcag
gatgtgatctttgcgctgctcaaggtgctcacccgccatggcgaaggcgttgccgccgac
ggcgtgctggagatcctgcccgacggtttcggcttcctgcgtgccgccgaggccagctat
ctggccggcccggacgatacgtatatctcgccgagccagatccgccgcttcaacctgcgc
accggcgaccatctgtccggccgcatccgcttccccaaggacggcgaacgctatttcgcg
ctgtcgatcgtggacaccattaatggtgagccgctggaagcgagcaagaacaaggtgctg
ttcgagaacctgaccccgctgttcccgcgtcggcgtttccgtctggaacgcggcgatggg
tccaccgaggacatcaccggccgcatcctcgatctgatggcaccgcagggtaaaggtcag
cgtgcgctgatcgtctccccgcccaaggccggtaagacgatgatgatgcagcaggtggcc
acggccatcaccaccaatcatcccgaagtgcacatgatcgtgctgctcatcgacgagcgc
ccggaagaagtgaccgaaatgcagcgcaccgtgcgcggcgaggtcatctcctccacgttc
gacgagccggccgcgcgccacgtgcaggttgccgagatggtgatcgaacgggccaagcgc
ctggtcgagcacaagaaggacgtggtgatcctgctggactccatcacccgtctggcacgc
gcctacaacaacgtggtgccgagctccggcaaggtgctcaccggtggtgtggatgccaac
gcgctgcatcgcccgaagcgcttcttcggtgcggcacgtaacgtggaagaaggcggttcg
ctgaccatcattgccacggcgctggtggaaaccggcagcaagatggacgaggtgatctac
gaagagttcaagggcaccggcaacagcgaagtgcatttgaaccgtcgcatcaccgaaaag
cgcgtgtacccggcgatcgacatcaaccgctcgggcacgcgtcgcgaagatctgttgatc
gagccggagctgctgcagaagatttggattctgcgcaagctgctgcatccgatggacgaa
atcgccgcgatggagttcctgctggacaagatgaagaccaccaagtccaacgacgagttc
ttcagctcaatgaagcgctga
DBGET
integrated database retrieval system
