Xanthomonas campestris pv. campestris ATCC 33913: XCC3883
Help
Entry
XCC3883 CDS
T00083
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xcc03016
]
XCC3883
Enzymes [BR:
xcc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
XCC3883
Transfer RNA biogenesis [BR:
xcc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
XCC3883
Prokaryotic type
tRNA splicing ligases
XCC3883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AAM43497
UniProt:
Q8P433
LinkDB
All DBs
Position
4613048..4614277
Genome browser
AA seq
409 aa
AA seq
DB search
MRTMNTHTYEFLHADGTSTPIKGWVRGVPLEEQALAQLRNIAAVPFVGPWVAVMPDVHLG
KGATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAKDLPDNLAQLRSSIERSVPVGNG
RGGEHRNLPDSIATRIAQSGLVQRLEAIKQTHRRIRTDKLECQIGTLGGGNHFIEICLDE
TDAVWVMLHSGSRGTGNLIGTYFIERAREQLANRVLGFHLPDKDLAFFMQGEPLFDEYVE
AVSWAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHGGEELLITRK
GAVSARTGELGIIPGSMGTRSYIVRGLGNAESFHSCSHGAGRVMSRTAARQQITLAQHRE
ATAHVECRKDAAVIDESPAAYKSIDAVMAAQQDLVEVLHTLRQVVCIKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgagaacaatgaacacacacacctacgaatttctgcatgccgatggcacctccacgccg
atcaagggctgggtgcgcggcgtaccgctggaagaacaggcgcttgcacagctgcgcaac
atcgccgccgtaccctttgtcgggccgtgggtggcggtgatgcccgacgtgcacctgggc
aagggcgcaaccgtgggctcggtgatcccgacccgcggcgccatcatcccggctgcggtc
ggggtggacatcggctgtggcatggccgcagtgcgcaccacgctgcgtgccaaggatctg
cccgacaacctggcccagctgcgctccagcatcgagcgcagcgtgccggtgggcaatggc
cgtggtggcgaacaccgtaaccttccggacagcatcgccacgcgcattgcacagtccggg
ctggtgcagcgcctggaggcgatcaagcagacccatcggcgcatccgtaccgacaagctg
gagtgccagatcggcacgttgggcggtggcaatcacttcatcgagatctgcctggacgaa
accgatgcggtctgggtgatgctgcacagcggctcgcgtggcaccggcaacctgatcggc
acctatttcatcgagcgggcgcgtgagcagctggccaaccgcgtgctgggctttcatttg
cccgacaaggacctcgcattcttcatgcaaggcgagccgttgttcgatgagtacgtggaa
gcggtgtcgtgggcgcaggattacgcccgcgaaaaccgcgaggcgatgatggcgcgggta
ttggcggaaatgcgccaccgcctgccgaagttccagctggaaaagctggcggtgaactgt
caccacaactacgtgcagaaggaaacgcacggcggcgaggaactgttgatcacccgcaag
ggcgcagtcagtgcgcgcaccggcgagctgggcatcattcccggcagcatgggtacgcgt
agctacatcgtgcgcgggctcggcaacgcggagagcttccacagctgcagccatggtgcg
ggccgggtcatgagccggaccgccgcgcgtcagcagatcacgctggcgcagcaccgcgaa
gcaactgcgcatgtggaatgccgcaaggatgcggcggtcatcgacgaatcgccggcggcg
tacaagtcgatcgacgccgtgatggccgcgcagcaggatctggtggaagtgctgcacaca
ctgcgccaggtggtgtgcatcaaggggtga
DBGET
integrated database retrieval system
