Xanthomonas campestris pv. campestris ATCC 33913: XCC4238
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Entry
XCC4238 CDS
T00083
Symbol
thdF
Name
(GenBank) thiophene and furan oxidation protein
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
xcc
Xanthomonas campestris pv. campestris ATCC 33913
Brite
KEGG Orthology (KO) [BR:
xcc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xcc03016
]
XCC4238 (thdF)
Transfer RNA biogenesis [BR:
xcc03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
XCC4238 (thdF)
Prokaryotic type
Methyltransferases
XCC4238 (thdF)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
FeoB_N
Dynamin_N
RsgA_GTPase
MCM
AAA_28
ABC_tran
T6SS_Tsi2-like
AIG1
Ras
AAA_21
AAA_29
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AAM43454
UniProt:
Q8P340
LinkDB
All DBs
Position
complement(5069466..5070806)
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AA seq
446 aa
AA seq
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MNALPSTIVAIATAAGTGGIGIVRLSGPQSVQIAAALGIAGLQSRHARYARFRDAQGEVI
DDGIAVWFPAPHSFTGEEVVELQGHGSPVLLRQLVARCIALGARQARAGEFSERAFLNGK
LDLAQAEAIADLIAAGDLRAARAARRSLDGVFSRRVDAVSESLTRLRIHVEAAIDFADEP
LDTLGGAQVREELTRTRALLAQLLRDAERGRKLRDGLHAVLIGPPNAGKSSLLNALAGSD
RAIVTDVAGTTRDTLHEAIQLDGFELTLVDTAGLREGGDAIEREGMRRARAELQRADLAL
IVLDARDPQAARDALGDAIDAVPRRLWIHNKCDLLAVAGPMDADAIAVSAVTGQGLEHLH
TRLRELALGDGIESVDGEFSARTRHVDALHRAEQHADAADLELRYEQLELAAEELRLAHE
ALGEITGKLSADDLLGKIFSSFCIGK
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctttgccttccaccatcgttgccatcgccactgctgccggaactggcggtatc
ggtatcgtgcggctgtccggcccgcagtctgtacagatcgccgccgcgctgggcatcgcc
ggactgcaatcgcggcatgcgcgttacgcgcgctttcgtgatgcgcagggcgaggtgatc
gatgacggcatcgcggtgtggttccccgcgccgcacagcttcaccggcgaagaggtggtg
gagctgcagggccacggcagcccggtgctgctacggcaattggtggcccgctgcatcgcg
ctgggtgcacgccaggcgcgtgcgggtgagttcagcgagcgggccttcctcaacggcaaa
ctcgacctggcacaggccgaagcgattgccgacctgatcgccgccggcgatctgcgcgca
gcgcgtgcggcgcgcagatcgctcgacggtgtgttctcgcggcgcgtggatgcggtgagt
gagagcctcacgcggttgcgcatccatgtggaagcggcgatcgactttgccgacgagccc
ctcgacacactgggcggcgcgcaggtgcgcgaggagctcacccgcacgcgcgcattgctt
gcgcagctgttgcgcgatgccgaacgtggacgcaagttgcgcgatggtttgcacgcagta
ctcatcggtccgcccaacgccggcaagagttccttgctcaatgccttggccggcagtgat
cgggcgatcgtgaccgatgttgccggtaccacgcgcgataccttgcatgaagcgatccag
ctcgatggattcgaactgaccctggtcgataccgcaggcctgcgcgagggcggcgatgca
atcgagcgcgaaggcatgcgccgcgcgcgcgccgaactgcagcgtgccgacctggcgctg
atcgtgctggatgcacgtgacccgcaggccgcgcgcgatgccctcggcgatgccattgat
gcggtaccgcgccggttgtggatccacaacaaatgcgacctgctggctgtggctgggcca
atggacgccgatgcgatcgcggtgtctgcggtgaccgggcaggggctggagcacctgcac
acccgcctgcgcgaactggcgctgggcgatggcatagaaagcgtggatggcgaattttca
gcgcgcacgcggcatgtcgatgcattgcaccgcgccgaacaacatgccgacgccgcagat
ctggagctgcgctacgagcagctcgaactggccgccgaagaactgcgcctggcgcatgaa
gccctcggcgaaatcaccggcaagctcagcgcggacgatctactcggcaagatcttttcg
agtttttgtatcgggaagtaa
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