Xanthomonas cannabis: RZV17_04965
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Entry
RZV17_04965 CDS
T11825
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xcd Xanthomonas cannabis
Pathway
xcd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xcd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RZV17_04965 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcd03021
]
RZV17_04965 (rpoC)
03400 DNA repair and recombination proteins [BR:
xcd03400
]
RZV17_04965 (rpoC)
Enzymes [BR:
xcd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RZV17_04965 (rpoC)
Transcription machinery [BR:
xcd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RZV17_04965 (rpoC)
DNA repair and recombination proteins [BR:
xcd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RZV17_04965 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XCO33625
LinkDB
All DBs
Position
1179302..1183519
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVDAVDGKRTSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKK
NISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEA
EVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSM
NSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLIMTPIVEGGDVVEPLKERV
LGRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARC
YGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSI
KFNNLKSVEHANGSLVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQGVA
NWDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAQAKELRPIV
RIVDGKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGL
PRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVF
EGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQ
MLRKVEIVDQGNSKFLNGEQVERQRVIEENARLTTRNELPAKYDPVLLGITKASLATESF
ISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHASRRKASGLTDSE
METLSGKPAVAEPVAAVADAGADEE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaatcagcagcgccagacgctggatttcgacgcgatc
aagatcgcgctggcgtcgccggacctgatccgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccgtaccttcaagccggagcgtgacggcctgttctgcgccgcc
atcttcggaccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaagtcaccctggccaaggtgcgtcgcgag
cgcatgggtcatatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccttcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtacctgaccgcacgccaggagtacaacgacgacttcgacgccgccatg
ggcgccgaagccgtgtacgagctgctgcgcacgatcgacctgcagtcggaaatgacccgc
ctgcgcgaggaaatcgccagcaccggttcggaaaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaagccttcctggaatcgggcaaccgtccggagtggatggtcatgacc
gtgcttcccgtgctgccgccggacctgcgtccgctggtgccgctggatggtggccgtttc
gcgacttcggatctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgcctgcgt
cgcctgctcgagctcaatgcgcccgacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgcggccgtgccatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactactccggtcgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaagtgatccgcgagcatccg
gtgctgctgaaccgtgcgccgaccctgcaccgtctgggcatccaggcgttcgaaccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtgtgtaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtccacgtgccgctctcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggcctgtactacatgagccgcgccctggagaacaag
aagggcgagggcatggtgtttgccaacaccagcgaagtgaagcgcgcctacgacaaccgc
gtggtggaactgcacgccaaggtcaaggtccgcatcacccaggtggacgttgacgccgtc
gatggcaagcgcaccagcggcacctcgatcgtggacaccacggtcggtcgtgcgctgttg
agcgaaatcctgcccgaaggcctgccgttccagctggccaacaccgagatgaccaagaag
aacatctcgcgtctgatcaactccagctaccgtctgctgggtttgaaggacaccgtcgtg
ttcgccgacaagctgatgtacaccggctacgcctacgccacccgcgcaggcgtgtcgatc
ggcatcgacgacatgctgatccctgacgagaagaagggcatcctcaccgaggccgaagcc
gaagtgctggaaatccaggagcagtaccagtcgggcctggtcaccgccggcgagcgctac
aacaaggtcgtggacatctggtcgcgtaccagcgagcgcatcgccaaggcgatgatggac
accatcggtaccgagaaggtcgaaaatgccaagggcgaaaccatcgaccagaagtcgatg
aactcgctgtacatcatggccgactccggtgcgcgtggtagccaggcgcagatccgtcag
ctggccggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatc
aaggcgaacttccgcgaaggtctgaacgtgcaggagtacttcaactccacccacggcgca
cgtaagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacccgtcgt
ctggtcgacgtggcgcaggacgtggtgatcaccgaagttgattgcggcaccaccgaaggg
ttgatcatgaccccgatcgtggaaggcggcgacgtggtggagccgttgaaggagcgcgtg
ctcggtcgtgtggtggccgaggacgtgtacctgccgggcaacgatgaagaaccgatcgtc
acccgcaacacgctgctcgacgaagcctgggttgccaagctcgaagacgccagcgtgcag
tcggtgaaggtgcgttcgaccatcagctgcgaatcctcgttcggcgtgtgcgcacgttgc
tacggtcgcgatctcgcacgcggtcaccaggtcaacatcggtgaagcggtcggcgtcatc
gccgcccagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggt
ggtgcggcgtcgcgtgcggcggccgtggacaacatcacggtcaagaccaccggttcgatc
aagttcaacaacttgaagtcggtcgagcatgccaatggttcgctggtcgcggtgtcgcgt
tcgggcgagctgtcggtactcgacggccacggtcgcgagcgcgagcgttacaagctgccg
tacggcgccaccatcactgccaaggacggtgacgcggtgaaggccgggcagggcgtggcc
aactgggatccgcataaccacccgatcgtgtcggaagtggccggtttcatccgcttcatc
gacttcgtcgacggcgtcaccgtcatcgagaagaccgacgagctgaccggtctggcctcg
cgcgaaatcaccgacccgaagcgtcgcggtgcacaggccaaggaactgcgcccgatcgtg
cgcatcgtcgacggcaagggcaacgacctgaccatcccgaacacggatctgccggcccag
tacctgttgccgccgcgctccatcgtcaacctgcaggacggcgctgccgtcggcgtgggc
gacgtggtggcgaagattccgcaggaagcgtccaagacccgcgacatcaccggtggtctg
ccgcgcgttgccgacttgttcgaggcacgcaagccgaaggatccggcgatcctggccgag
cgttcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaag
gacaccgatggttcggaacacgaagagctgatcccgaagtaccgccagatcatcgtgttc
gaaggcgagcacgtgaccaagggcgaaaccgtggtggacggcgagccgagcccgcaggac
atcctgcgtctgctgggcgtcgagccgctggccgcctacctggtcaaggaaatccaggac
gtgtaccgcctgcagggcgtgaagatcaacgacaagcacatcgaagtgatcacccgccag
atgttgcgcaaggttgaaatcgtcgaccagggcaacagcaagttcctcaacggcgagcag
gtcgagcgccagcgcgtcatcgaggaaaatgcacgtctgaccacgcgcaacgaactgccg
gccaagtacgatccggtgttgttgggtatcaccaaggcctcgctggccaccgagtcgttc
atctcggcggcgtcgttccaggagaccacccgcgtgttgaccgaggcggccgttcgcggt
acccgcgacaacctgcgcggtctgaaggagaacgtgatcgtgggtcgtctgattccggcc
ggtaccggtctggcgtatcacgccagccgtcgcaaggcgtcgggtctgaccgactctgaa
atggaaacgctgtcgggcaagcccgcagtggccgaaccggtcgcagccgtggccgacgct
ggcgcggacgaggagtaa
DBGET
integrated database retrieval system
