Xanthomonas cannabis: RZV17_18420
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Entry
RZV17_18420 CDS
T11825
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xcd Xanthomonas cannabis
Brite
KEGG Orthology (KO) [BR:
xcd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xcd03016
]
RZV17_18420
Enzymes [BR:
xcd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RZV17_18420
Transfer RNA biogenesis [BR:
xcd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RZV17_18420
Prokaryotic type
tRNA splicing ligases
RZV17_18420
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
Motif
Other DBs
NCBI-ProteinID:
XCO32410
LinkDB
All DBs
Position
4361869..4363092
Genome browser
AA seq
407 aa
AA seq
DB search
MSTSQHFELLHAEGSTTPIKGWVRGVPLEAQAHAQLRNIAAVPFVGPWVAVMPDVHLGKG
ATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRASDLPDNLAQLRSSIERSVPVGNGRG
GEHRTLPDSIETRIARSGLVQRLDAIKQQHRRIRTDKLECQIGTLGGGNHFIELCLDETD
AVWVMLHSGSRGTGNLIGSYFIERAREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYVEAV
SWAQDYACENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHAGEELLITRKGA
VSARAGELGIIPGSMGTRSYIVRGLGNAESFHSCSHGAGRVMSRTAARAQITLAQHRQAT
AHVECRKDAAVIDESPAAYKSIEAVMAAQQDLVEVLHTLRQVVCIKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgagtacctcacaacattttgaattactgcatgccgaaggcagcaccaccccgatcaag
ggctgggtgcgcggcgtgccgctggaagcgcaggcgcatgcgcagttgcgcaacatcgcc
gcggtgccgttcgtcggcccctgggtggcggtgatgcccgacgtgcatctgggcaaaggt
gcaaccgtgggctcggtgatcccgacccgtggcgccatcatcccggcagcggtgggcgtg
gacatcggctgcggcatggccgccgtacgtaccacgctgcgtgccagtgatctgccggac
aatctggcgcagttgcgctccagcatcgagcgtagcgtgccggtgggcaacggtcgcggc
ggcgaacaccgcacgctgcccgacagtatcgaaacccgcatcgcgcgttcggggttggtg
caacgtctggacgcgatcaaacagcagcacaggcgcatccgcaccgacaagctggaatgc
cagatcggcacgctgggcggcggcaatcacttcatcgaactctgcctggacgaaaccgat
gcggtgtgggtgatgctgcacagcggctcgcgcggcaccggcaacctgatcggcagctac
ttcatcgagcgcgcacgcgagcaactggcgcaccgcgtgctgggctttcatctgcccgac
aaggacctggccttcttcatgcagggcgagcccttgttcgacgagtacgtcgaagcggtg
tcgtgggcgcaggattacgcatgcgaaaaccgcgaggcgatgatggcacgggtgctggcc
gagatgcgtcaccgcttgccgaaattccagctggaaaagctcgcggtcaattgccaccac
aactacgtgcagaaggagacgcacgccggcgaggagctgttgatcacccgtaagggcgcg
gtgagcgcacgcgccggcgagctgggcatcattccgggcagcatgggcacgcgcagctac
atcgtgcgcgggttgggtaacgcggagagttttcacagctgcagtcacggcgcaggccgc
gtgatgagcaggacggccgcacgtgcacagatcaccctcgcccagcatcgccaggcaacg
gcgcatgtggaatgccgcaaggatgccgccgtcatcgatgagtcgccggccgcctacaag
tcgatcgaggcagtgatggcagcacagcaggatctggtcgaagtactgcacacgttgcgc
caggtggtgtgcatcaaggggtaa
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