Xylanimonas cellulosilytica: Xcel_0074
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Entry
Xcel_0074 CDS
T01135
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xce
Xylanimonas cellulosilytica
Brite
KEGG Orthology (KO) [BR:
xce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xce03019
]
Xcel_0074
Enzymes [BR:
xce01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Xcel_0074
Messenger RNA biogenesis [BR:
xce03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Xcel_0074
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
DEAD
Helicase_C
AAA_22
AAA_19
NACHT
ABC_tran
nSTAND_NTPase5
nSTAND3
T2SSE
SLFN-g3_helicase
PhoH
AAA_25
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ACZ29115
UniProt:
D1BTV1
LinkDB
All DBs
Position
complement(78585..83459)
Genome browser
AA seq
1624 aa
AA seq
DB search
MSTAPAAPQPPSPDDDGRRRDGGRRRRGRREGQRDPRRGPEGAGQRGPQRTGQRGPRRVS
RAHLDKLAATRTAVVVPPITYPEQLPVSARREDIATAIRENQVVVVAGETGSGKTTQLPK
ILLDLGRGRAGQIGHTQPRRIAARSVAERIAEELRTTLGEIVGYQVRFTDQSSEQTLVKV
MTDGILLAQIQRDPELLAYDTIVIDEAHERSLNIDFLLGYLSRLLPRRPDLKVIITSATI
DSQRFAEHFSPSHLAALGGAPEAVVDVLPKAAPVVEVSGRTYPVEIRYRPLVPEVSENGL
QKKGEERDLVTGIIEACDELMRCGPGDILVFLSGEREIRDALDGLEGHLGARARDPRHPQ
HVEILPLYSRLSAAEQHRVFAAHPGRRIVLSTNVAETSLTVPGIHYVVDTGLARISRYSK
ATKVQRLPIEAISQASANQRSGRSGRVADGVAVRLYSQADFEARPEYTEPEILRTSLASV
LLQMIAVGVVESPDEMARFPFVEKPDTRAVRDGVMLLRELGALETVVEPTPAVVEPVETT
PSPVVEPPSPVVEPVETTPPPSDVVSTGSTTGGRTSTTGAGRTTTRLTTVGRQLAQLPMD
PRLARMIIEGARRGAAREVAVIAAALSVQDPRERPAEVRERADQLHARFADPTSDFLSYL
NLWEYLRDQQRDLSGSAFRRLCKAEHLNYLRVREWQDVVAQLRQMANELGINLSSRASVV
EPVETTPRVDGGVVSTGSTTAEGADDGQPRSGEWRRVWDGDTIHRALLAGLLSQVGMQDT
GEIKASSVAHLKGEARARALRQQAKRVRNEYLGARGARFAIFPGSPLSKKPPAWVMAGEL
VETSRLWARDVARIQPEWAEELAGDLARRTYSDPHWSTKQGAAMATEKVLLYGVPIVSDR
PVLFARVDPEAAREMFIRHALVQGEWTTHHTFFAENRRLLEEAEQVEARSRQRGLVASED
DLFAFYDERVPASVVSARHFDQWWSRARRETPDLLTFRLEDLVDVDAVDPSQFPSSWTQG
ELTLPLTYQFRPGSDADGVTVHVPLSVLPRLSPSGFDWMVPGLLEELCVATIRSLPKAVR
VQLVPAPDVGNAVAGWLRQNTPTWEDMARAGDMAEPFHVAFTRAVRALRDVVVPGDAWDT
ERVERLPAHLRMTFRVVESGVKSGGPTTAAGSRGSGRGGRGRGRDGRGSPSAAAAVSPSG
TGAAGAAIDESKDLLALQRRLAPKAEAAVRAAVKGAVAVALEEARSRTAALSAGGSAEAN
PSVVEPVETTGRRVVSTGSTTGGGGSTTGGGGSTTGRPGGSTTGGGRGVVAERLGLATWP
DGLPDGRLPDVVSTDLGGGVVVRGYPALVEEPGPKQEPTVALRILADALEQPATHARGVR
RLLLAENRLTAGRVTSRWSGTQALTLAASPYRNTNLLAEDLQLATVMALTSPAADLAPGT
PAGPHAVQIRDAESYNAAKAHVRTHLEDETYRVAGHVVAALTAWRTLESEVRKTSSLALL
NTLQDIREHAATLIHDGFVSATPPRRLPHLVRYLRAASYRLEKAQASPHRDAELAWRIHD
VEEAYAKARAAYAAGPADAARAAELAEVRWLIEELRVSLFAQQLGTDGTVSEKRIRKTLA
PNGW
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgcaccagccgcaccacagccgccgtcgcccgacgacgacggccggcgtcgt
gacggcggacgccgtcggcgaggtcgacgcgagggtcagcgcgacccacggcgcggccct
gagggcgccggccagcgcggccctcagcgcaccggccagcgcggcccacgccgcgtctcg
cgggcgcacctggacaagctggccgccacccgcaccgccgtcgtcgtgccccccatcacc
tatccggagcagctgcccgtcagcgcacgccgggaggacatcgcgacggcgatccgcgag
aaccaggtcgtcgtcgtcgcgggcgagacgggatccggcaagacgacgcagctgccgaag
atcctgctggacctcggccgcgggcgggccgggcagatcggccacacgcagccgcggcgc
atcgcggcacgcagcgtcgccgagcgcatcgccgaagagctgaggaccacactcggggag
atcgtcggctaccaggtgcggttcacggaccagtcgagcgagcagaccctcgtcaaggtg
atgacggacggcatcctgctcgcgcagatccagcgggacccggagctgctcgcctacgac
acgatcgtgatcgacgaggcgcacgagcggtcgctcaacatcgacttcctgctcgggtac
ctctcgcggctgctgccgcgccggcccgacctcaaggtgatcatcacctccgcgaccatc
gactcgcagcggttcgcggagcacttctcgccatcgcacctggcggcgctgggcggggct
cccgaggccgtcgtcgacgtgctgccgaaggcggcgcccgtggtcgaggtgtcggggcgc
acctacccggtcgagatccggtaccggccgctcgtccccgaggtcagcgagaacgggctg
cagaagaagggcgaggagagagacctcgtcaccggcatcatcgaggcctgcgacgagctc
atgcgctgcggaccgggggacatcctcgtgttcctctcgggcgagcgggagatccgcgac
gcgctcgacgggctcgaagggcatctcggtgcgcgcgctcgcgacccgcggcacccgcag
cacgtcgagatcctgccgctgtactcgcggctctcggccgccgagcagcaccgcgtcttc
gccgcacaccccggccggcgcatcgtgctgtcgaccaacgtcgccgagacctcgttgacc
gtccccggcatccactacgtcgtcgacaccggcctggcgcgcatctcgcgctactccaag
gccaccaaggtgcagcgcctgccgatcgaggcgatctcgcaggcgtccgcgaaccagcgg
tccgggcggtccgggcgcgtggccgacggcgtcgccgtccgcctgtactcccaggccgac
ttcgaggcccgccccgagtacaccgagcccgagatcctgcggacctcgctcgcgtcggtg
ctgctgcagatgatcgccgtcggcgtcgtcgagagccctgacgagatggcccggttcccg
ttcgtcgagaagccggacacgcgcgcggtccgcgacggcgtgatgctgctgcgcgagctc
ggcgccctggagacagtggtagagccgacccccgcggtggtagagcctgtcgaaaccacc
cccagcccggtggttgaaccccccagcccggtggttgagcctgtcgaaaccaccccaccg
ccgtcggacgtggtttcgacaggctcaaccaccgggggtcggacctcgaccaccggtgcg
ggccgcacgacgacgcggctgaccaccgtcggacggcagctcgcccagctgccgatggat
ccacggctggcacgcatgatcatcgagggcgcccggcggggtgcggcccgcgaggtcgcc
gtgatcgcggcggcgctgtcggtgcaagacccccgcgagcgccccgccgaggtccgcgag
cgtgccgaccagctccatgcccggttcgcggacccgacgtcggacttcctgagctacctc
aacctgtgggagtacctgcgcgaccagcagcgcgacctgtccgggtcggcgttccggcgc
ctgtgcaaggcggagcacctcaactacctgcgcgtgcgcgagtggcaggacgtcgtcgcg
cagctccggcagatggcgaacgagctgggcatcaacctgtcctcgcgcgcttcggtggtt
gagcctgtcgaaaccaccccgcgggtcgacggcggggtggtttcgacaggatcgaccacc
gcggaaggcgccgacgacggtcagccccgcagcggtgagtggcggcgcgtgtgggacggc
gacaccatccaccgcgcgctcctggccggtctgctgtcccaggtgggcatgcaggacacc
ggcgagatcaaggcctcctcggtcgcccacctcaagggcgaggcgcgggctcgtgcgctg
cggcagcaggccaagcgggtgcgcaacgagtacctgggcgcgcgcggggcgaggttcgcg
atcttccccggctcgccgctgtcgaagaagccgccggcgtgggtcatggcgggcgagctg
gtggagacctcgcgcctgtgggcgcgggacgtggcgcgcatccagcccgagtgggccgag
gagctcgcgggcgatctcgcgcgccgcacctactccgacccgcactggtccaccaagcag
ggcgccgcgatggccaccgagaaggtgctgctgtacggcgtccccatcgtcagcgaccgg
ccggtgctgttcgcccgcgtggacccggaagcggcccgggagatgttcatccggcatgcg
ctggtgcagggcgagtggaccacgcaccacacgttcttcgccgagaaccgccgtctgctg
gaggaggccgagcaggtcgaggcccgttcccggcagcgcggcctggtcgcctccgaggac
gacctgttcgccttctacgacgagcgtgtccccgcgtccgtcgtgagcgcgcggcacttc
gaccagtggtggtcgcgcgcccggcgcgagaccccggacctcctgacgttccgcctcgag
gacctcgtcgacgtcgacgccgtggacccgtcgcagttcccgtcgtcgtggacgcagggc
gagctcaccctgccgctgacctaccagttccgccccgggtccgacgccgacggcgtcacc
gtgcacgtgccgctctcggtgctgccgcggctctcgccgtcgggcttcgactggatggtg
cccggactgctcgaagagctgtgcgtcgccacgattcgctcccttcccaaggccgtacgc
gtgcagctcgtgcccgcgcccgacgtcgggaacgccgtcgcgggctggctgcggcagaac
acgccgacgtgggaggacatggcccgggcgggtgacatggccgagcccttccacgtggcg
ttcacgcgcgcggtgcgtgcgctgcgcgacgtcgtcgtgcccggcgacgcctgggacacc
gaacgggtcgagcgcctgcccgcacacctgcgcatgaccttccgcgtcgtggagtccggt
gtgaagtccggcgggccgacgacggcggcgggctcccgcggaagcggtcgtggtgggcga
gggcgcggccgggacggccggggttccccgagcgccgcggctgccgtctcgccgtcgggc
acgggcgcggcgggtgctgccatcgacgagtcgaaggatctcctcgcgctgcagcgacgc
cttgccccgaaggcggaggcggcggtacgcgccgcggtcaagggcgcggtcgcggtcgcc
ctggaggaggcccgctcgcgcacggcggccctctcggcgggtggctctgctgaagccaac
ccctcggtggttgagcctgtcgaaaccacgggtcggcgcgtggtttcgacaggctcaacc
accggaggaggcggctcaaccaccggaggaggcggctcaaccaccggaaggccgggaggc
tcgaccaccggaggcggccgcggggtggtcgccgagcggctcgggctggccacgtggccg
gacgggctccccgacgggcggctgcccgacgtcgtctcgacggatctgggcggaggagtc
gtcgtgcgcggctatccggcgctcgtcgaggagccgggaccgaagcaggaacccacggtc
gcgctgcgcatcctggccgatgcgctggagcagccggcgacgcacgcgcgcggggtgcgg
cggctgttgctcgccgagaaccggctcaccgcggggcgggtcacgtcccggtggagcggc
acgcaggcgctcaccctcgctgcgagcccgtaccggaacacgaacctgctcgccgaggat
ctgcagctggccactgtcatggcgctgaccagccctgccgcggacctcgcccccggaact
ccggcagggccgcacgccgtacagatccgcgatgccgagtcgtacaacgccgcgaaggcg
cacgtccgcacgcacctcgaggacgagacctaccgggtcgcgggtcatgtggtcgcggcg
ctgaccgcctggcggaccctggagtccgaggtccgcaagacgtcctcgctcgccctgctc
aacacgctgcaggacatccgcgagcacgcggccacgctcatccacgacggtttcgtcagc
gctaccccgccccgtcggctgccgcacctggtccgctacctgcgggccgcgtcgtaccgg
ctggagaaggcgcaggcctccccgcaccgcgacgccgagctggcctggcggatccacgac
gtcgaggaggcgtacgcgaaggcgcgcgccgcctacgccgccggcccggcggacgccgcc
cgggccgccgagctcgccgaggtccgctggctgatcgaggagctgcgtgtgtccctgttc
gcccagcagctcggcaccgacggcaccgtctcggagaagcgcatccgcaagactttggcc
cccaatggctggtga
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