Xylanimonas cellulosilytica: Xcel_0621
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Entry
Xcel_0621 CDS
T01135
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xce
Xylanimonas cellulosilytica
Pathway
xce03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xce00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Xcel_0621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xce03021
]
Xcel_0621
03400 DNA repair and recombination proteins [BR:
xce03400
]
Xcel_0621
Enzymes [BR:
xce01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Xcel_0621
Transcription machinery [BR:
xce03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Xcel_0621
DNA repair and recombination proteins [BR:
xce03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Xcel_0621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ACZ29660
UniProt:
D1BWS8
LinkDB
All DBs
Position
683479..687354
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDVNVFDELRIGLATADDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIVCERCGVEVTRSKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDEEGRHEDLPRLQNEIDLEKKEIADRRDNDINARALKLEHD
IAELEAEGAKADARRKVRDAAEREMANLRKRADAELDRLENVWDRFKNLKVADLEGDEML
YRALQDRYGTYFEGSMGAAAIQKRLESFDLEAESANLREIIRSGKGQRKTRALKRLKVVN
AFLTTTNSPTAMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPTLKLHQCGLPKQMALELFKPFVMKRLVELNHAQNIKSAKRMVERTR
SVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPSQDMIIGLHHLTSDRPGALGEGR
VFSSQAEAIMAFDRGQLDINAYVKIRMDDVVYEPGQEPEGWEPGATELKETTLGRTVFNE
ALPVDYPFQNRVIGKKELSEIVNDLAESYPKVEVAASLDALKDAGYKWATRSGVTIAISD
VAMPAVKNEILDEHEQRALKVQQQFERGLITDDERRQELIEIWTQATDKVASVMRENLES
DARNTLFRMVSSGARGNWMQVRQIAGMRGLVANPKGEIIPRPIKSNYREGLSVLEYFIAS
HGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLTLPVGERIGDTLVPHP
RVQTSIYARTLAVDVANADGTVIAQGGHDAGDAEIEALLAAGVENVKVRSVLTCESRVGT
CAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVT
ELFEARTPKGEAPIAEFTGRLAIEDMERSRVLVLTPDDGSEELRYQVSKRARLLVEDGQH
VSVGTQLVQGARDPKKVLRILGPRAAQKFLVDEVQETYRSQGVDIHDKHIEVIVRQMLRR
VTVLDSGDTNLLPGELAERTRFEDANRGAVAEGGHPASGRPELMGITKASLATDSWLSAA
SFQETTRVLTEAAMSGRRDPLLGLKENVIIGKLIPAGTGLSRYRNIEVEPTEQAKAELYP
SFGYDEIDFPTLGMGSGEAIPLEDLDFGDFR
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaacgtcttcgacgagctgcgtatcggcctggccacggccgacgacatc
cgcgcatggtcgcacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgctgcggtgtg
gaggtcacgcggtccaaggtgcgccgtgagcgcatgggccacatcgagctggccgccccg
gtcacgcacatctggttcttcaagggtgtgccgtcccgcctgggctacctgctcgacctc
gcgcccaaggacctggagaaggtcatctacttcgcggcctacatgatcacgtgggtcgac
gaggagggccgtcacgaggacctgccgcgtctccagaacgagatcgacctggagaagaag
gagatcgcggaccgccgcgacaacgacatcaacgcccgcgccctcaagctcgagcacgac
atcgccgagctcgaggccgagggtgccaaggccgacgcacgccgcaaggtgcgcgacgcc
gcggagcgcgagatggcgaacctgcgcaagcgcgcggacgccgagctcgaccgtctcgag
aacgtgtgggaccgcttcaagaacctcaaggtcgccgacctcgagggtgacgagatgctg
taccgcgcgctgcaggaccggtacggcacgtacttcgagggctcgatgggcgccgcggcg
atccagaagcgcctcgagtcgttcgacctggaggcggagagcgcgaacctgcgcgagatc
atccgctcgggcaaggggcagcgcaagacccgcgcgctcaagcgcctcaaggtggtcaac
gcgttcctcacgacgacgaactcgccgaccgcgatggtgctcgacgccgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccggttcgcgacgtcggacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtctcaagcgcctgctcgacctc
ggggctcccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtggactcg
ctgttcgacaacggtcgccgcggtcgtccggtgacgggcccgggcaaccgcccgctgaag
tccatctcggacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggccccaccctgaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctgttcaagccgttcgtgatgaagcgcctc
gtggagctcaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgcacgcgc
tcggtcgtgtgggacgtgctggaggaggtcatcaccgagcaccccgtgctgctcaaccgt
gcccccaccctgcaccgtctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccacctgcacccgctcgtgtgcgccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctgagcgcggaggcgcaggccgaggcccgcatcctcatgctc
tcgagcaacaacatcctcaagccgtcggacggccgtccggtgaccatgccctcgcaggac
atgatcatcggtctgcaccacctgacgtcggaccgcccgggcgccctgggcgaggggcgc
gtgttctcctcgcaggccgaggcgatcatggcgttcgaccgcggtcagctcgacatcaac
gcgtacgtcaagatccgcatggacgacgtcgtgtacgagcccggccaggagcccgaggga
tgggagcccggcgccacggagctcaaggagacgacgctgggccgcacggtcttcaacgag
gcgctccccgtcgactacccgttccagaaccgggtgatcggcaagaaggagctctcggag
atcgtcaacgacctcgccgagtcgtacccgaaggtcgaggtcgcggcctcgctcgacgcg
ctgaaggacgccggctacaagtgggcgacccggtcgggcgtcacgatcgccatctccgac
gtcgccatgccggcggtgaagaacgagatcctcgacgagcacgagcagcgtgcgctcaag
gttcagcagcagttcgagcgcggtctgatcaccgacgacgagcgccgtcaggagctcatc
gagatctggacccaggccaccgacaaggtcgcctcggtcatgcgcgagaacctcgagagc
gacgcccgcaacaccctgttccgcatggtgtcctcgggtgcccgtggtaactggatgcag
gtccgccagatcgccggtatgcgtggtctcgtggcgaacccgaagggcgagatcatcccg
cgcccgatcaagtccaactaccgcgagggtctgtccgtcctcgagtacttcatcgcctcg
cacggtgcccgcaagggcctggcggacacggcgctgcgtaccgcggactcgggctacctg
acccgtcgtctcgtggacgtctcgcaggacgtcatcatccgcgaggaggactgcggcacc
gagcgcggcctgaccctgccggtcggggagcgcatcggcgacaccctggtgccgcacccc
cgcgtgcagacgtcgatctacgcgcgcacgctcgcggtggacgtcgcgaacgccgacggc
accgtcatcgcccagggcggtcacgacgccggcgacgccgagatcgaggcgctgctcgcg
gcgggcgtcgagaacgtcaaggtgcgctcggtgctcacctgcgagtcgcgcgtcggcacc
tgcgccaagtgctacggccggtcgctggccacgggcaagctcgtggacatcggcgaggcc
gtcggcatcatcgcggcccagtcgatcggtgagcccggcacgcagctgacgatgcgtacc
ttccacaccggtggtgtggcctcggccgacgacatcacgcagggtctgccccgcgtgacc
gagctcttcgaggcccgcacccccaagggtgaggcgcccatcgcggagttcaccggtcgc
ctggcgatcgaggacatggagcgttcgcgcgtcctcgtcctgacgcccgacgacggcagc
gaggagctccggtaccaggtctccaagcgcgctcgcctgctggtcgaggacggccagcac
gtctcggtcggcacgcagctcgtccagggtgcgcgcgaccccaagaaggtgctgcgcatc
ctcggcccgcgtgccgcgcagaagttcctggtggacgaggtccaggagacctaccgcagc
cagggcgtggacatccacgacaagcacatcgaggtcatcgtgcggcagatgctgcgtcgc
gtgaccgtgctggactcgggcgacacgaacctgctgccgggcgagctcgcggagcgcacg
cgcttcgaggacgccaaccgtggcgccgtggcggagggtggccacccggcctccggccgt
ccggagctcatgggcatcacgaaggcctcgctcgccaccgactcgtggctctcggccgcc
tccttccaggagacgacccgggtgctcacggaggcggcgatgagcggccgtcgggacccg
ctgctgggcctcaaggagaacgtcatcatcggtaagctcatccccgccggcacgggcctg
tcccgctaccggaacatcgaggtcgagcccaccgagcaggcgaaggccgagctctacccg
agcttcggctacgacgagatcgacttcccgacgctcggcatgggctcgggcgaggcgatc
ccgctcgaggacctggacttcggcgacttccgctga
DBGET
integrated database retrieval system
