Xanthomonas citri pv. citri mf20: J172_02854
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Entry
J172_02854 CDS
T03781
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xcf
Xanthomonas citri pv. citri mf20
Pathway
xcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J172_02854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcf03019
]
J172_02854
03016 Transfer RNA biogenesis [BR:
xcf03016
]
J172_02854
Enzymes [BR:
xcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
J172_02854
Messenger RNA biogenesis [BR:
xcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J172_02854
Transfer RNA biogenesis [BR:
xcf03016
]
Prokaryotic type
tRNA degradation factors
J172_02854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
S1_2
KH_PNO1_2nd
DUF7680
Motif
Other DBs
NCBI-ProteinID:
AJZ09398
UniProt:
A0A0U5FJN4
LinkDB
All DBs
Position
complement(3140951..3143065)
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AA seq
704 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKVDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAG
TANAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDG
MIAALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGE
LEYQTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVQASAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcactcttgagacgggc
gaaatcgctcgccaggcaggcggcgccgtgatcgtcaaggtcgacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaagggcaggacttctttcctctgacggtc
gattatcaggagaagttctacgctggcggccgcatcccgggcggcttcttcaagcgcgaa
ggacgcgcgaccgagaaggaaacgttgatctcgcgcctgatcgatcgtccgatccgtccg
ctgttcccggaggactacaagaacgaagtgcagatcatcgccaccgtgatgtcgatgaac
ccggacatcgacggcgatatcgccgcgctgatcggcgcctcggctgcactgtcgctggca
ggcactcccttcaagggcccgatcggcgccgccaaggtcggctacaagaacggcgaatac
atcctcaacccgaccgtgaccgagctgaaggattcgcagctggagttggtcgtggccggt
accgccaacgcggtgctgatggtcgagtccgaagccgagttgctgtccgaagaagtcatg
ctgggcgcagtgacgttcggccatcgcgagatgcagaaggtcatcaacgtcatcaacgag
ctgaccgtcgaggccggcaccaagccgtccgactgggtggccccggcgaagaacgacggc
atgatcgctgccctgaaggaagcggtgggcgaccagctggcgtcggcgttccaggtgcgc
gacaagctgcagcgccgcgatgcgatttccgcgatcaagaaggacgtgctgggcgcactg
gcgccgcgcgccaccatcgaaggctgggctgccggtgatctggccaaggaattcggcgag
ctggaataccagaccatgcgtggttcggtgttgagcaccaaggtgcgtatcgacggtcgt
gcactggataccgtgcgtccgatcagcgccacggccggtgtgttgccgcgtacccatggc
tcggcgctgtttacccgcggcgagacgcaggcgatcgtgatcaccacgctgggcaccgcg
cgcgacggtcaggtcatcgacgcggtgtcgggcgagtacaaggaaaatttcctgttccat
tacaacttccctccgtactcggtgggcgagtgcggtcgtttcggtgcgccgaagcgtcgc
gaaatcggccacggccgcctggccaagcgcggcgtgctggcagtgatgccgaccctggaa
gaattcccgtacaccatccgcgtggtctcggaaatcaccgaatccaacggttcgtcctcg
atggcatcggtctgcggcagctcgctggcgctgatggatgctggcgtgccgatcaaggcg
ccggtcgcgggtatcgcaatgggcctggtcaaggaaggcaacgacttcgtcgtgctctcc
gacatcctgggtgacgaagatcacctcggcgacatggacttcaaggtggccggtactgcc
gaaggcgtgtccgccctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggcattgcagcaggccaaggctggccgtctgcacatcctgggcgagatggcgcat
gcgctgaccaccccgcgtcaggagctgagcgactacgcgccgcgcctgctcaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggctcgaccatccaggccatc
accaaggaaaccggcacgcagatcgacatccaggacgatggcacgatcatcatcgcctcg
gtcaatgccatcgctgcgcaggctgcgaagtcgcgcatcgaacagatcacctcggacgtg
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
accatcctgccgggcaaggacggcctggtgcacgtctcgcagatttccagcgagcgcgtg
gagaaggtcggcgacaagttgaaggaaggcgatctggtccgcgtcaaggtgctggaagtg
gacaagcagggccgcatccgcctgtcgatcaaggcagtggaagaaggcgaaggcgtgcag
gcgtcggccgagtaa
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