Xanthomonas citri pv. citri mf20: J172_04135
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Entry
J172_04135 CDS
T03781
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xcf
Xanthomonas citri pv. citri mf20
Brite
KEGG Orthology (KO) [BR:
xcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xcf03016
]
J172_04135
Enzymes [BR:
xcf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J172_04135
Transfer RNA biogenesis [BR:
xcf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J172_04135
Prokaryotic type
tRNA splicing ligases
J172_04135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
Motif
Other DBs
NCBI-ProteinID:
AJZ10662
LinkDB
All DBs
Position
4660959..4662182
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AA seq
407 aa
AA seq
DB search
MSTSQHFEFLHAEGSTTPIKGWVRGVPLEEQAHAQLRNIAAVPFVGPWVAVMPDVHLGKG
ATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAADLPDNLAQLRASIERSVPVGNGRG
GEHRKLPDSIESRIAQSGLVQRLDAIKQQHKRIRTDKLDCQIGTLGGGNHFIEICLDGTD
AVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYVEAV
SWAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHGGEELLITRKGA
VSARAGELGIIPGSMGTRSYIVRGLGNADSFHSCSHGAGRVMSRTAARAQITLAQHREAT
AHVECRKDAAVIDESPAAYKSIDAVMAAQQDLVEVLHTLRQVVCIKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatcgcaacactttgaatttctgcacgccgaaggcagcacgaccccgatcaag
ggctgggtacgcggcgtgcccctggaagaacaggcacatgcgcagctgcgcaatatcgcg
gcggtaccgtttgtcggtccgtgggtcgcggtgatgccagacgtgcatctgggcaagggc
gcaaccgtgggctcggtgattccgacccgtggcgccatcatcccggcggcggtcggcgtg
gatatcggctgcggcatggctgcagtgcgcaccacactgcgcgccgccgacctgcccgac
aatctggcgcagttgcgtgccagcatcgagcgcagcgtgccggtgggcaacggccgtggc
ggcgagcatcgcaagctgccggacagcattgagagccgcattgcgcagtccgggctggtg
cagcgcctggatgcgatcaagcagcagcacaagcgcatccgtaccgacaagctggactgc
cagatcggcacgctgggcggcggcaaccacttcatcgagatctgcctggacggaaccgat
gcggtatgggtgatgctgcacagcgggtcgcgcggcaccggcaacctgatcggcacgtac
ttcatcgagcgcgcgcgtgagcaactggcacatcgcgtgctgggcttccatctacccgac
aaggacctggccttcttcatgcagggcgagcccttgttcgacgaatacgtcgaagcggtg
tcgtgggcgcaggattacgcccgcgaaaatcgtgaggcgatgatggcgcgcgtgctggcc
gagatgcgtcaccgcctgccgaaattccagctggaaaagctcgcagtcaattgccaccac
aactacgtgcagaaggaaacgcacggtggcgaggaattgttgatcacccgcaagggagcg
gtgagcgctcgtgccggcgagctgggcatcattccgggtagcatgggcacgcgcagctac
atcgtacgtgggttgggcaatgccgacagtttccacagctgcagccacggcgcagggcgt
gtgatgagcaggaccgctgcacgcgcgcagatcaccctggcacagcatcgggaggccacc
gcacatgtggaatgccgcaaggacgcggcagtgatcgatgagtcgcctgcggcgtacaag
tccatcgatgcggtgatggcggcgcagcaggatctggtcgaggtgctgcacaccttgcgc
caagtggtgtgcatcaagggatag
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