Xanthomonas citri subsp. citri Aw12879: XCAW_00388
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Entry
XCAW_00388 CDS
T02519
Symbol
nei
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
xci
Xanthomonas citri subsp. citri Aw12879
Pathway
xci03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XCAW_00388 (nei)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xci03400
]
XCAW_00388 (nei)
Enzymes [BR:
xci01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
XCAW_00388 (nei)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
XCAW_00388 (nei)
DNA repair and recombination proteins [BR:
xci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
XCAW_00388 (nei)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AGI06207
LinkDB
All DBs
Position
461321..462151
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AA seq
276 aa
AA seq
DB search
MPELPEVETTLRGLSPHLVGQRIHGVILRRPDLRRPDLRWPIPEQIERLLPGATITNVRR
RAKYLLIDTDAGGSVLLHLGMSGSLRVLPGDTLPRAHDHVDISLQSGRLLRFNDPRRFGC
LLWQSGTQAHDLLAALGPEPLSDAFTGDYLHALAQGRRAAVKTFLMDQAVVVGVGNIYAA
ESLHRAGISPLREAGKVSLERYRRLADAVKDILAYAIQRGGTTLRDFISPDGAPGYFEQE
LFVYGREGEACKQCGRVLKHATIGQRATVWCGSCQR
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttgcccgaggtcgaaacgacgttgcgtggcctgtcgccgcatctggttggg
cagcggatccatggcgtgatcctgcgtcggcccgatctgcgtcggcccgatctgcgttgg
ccgattcccgagcagatcgagcgcttgcttcccggcgccaccattaccaacgtgcgccga
cgtgcgaaatacttgctgatcgatacggatgccggcggcagcgtgctgttgcatctgggg
atgtccggaagtctgcgggtgctgcctggcgacacgttgccgcgggcgcacgaccatgtg
gatatcagtctgcaaagcgggcgcttgctgcgtttcaacgatccgcgtcgctttggctgc
ctgttgtggcaatccggcacacaagcccatgacttgctcgctgcgcttggtccagaacca
ttatcggatgcatttactggcgattatctccacgcgctggcacaggggcggcgcgctgcc
gtcaagacctttttgatggatcaggccgtggttgtcggagttggaaatatctacgctgcc
gaaagcctgcatcgggcgggaatcagtccgttgcgcgaggcggggaaggtctcgctggag
cgttatcggcgtctggctgatgcagtgaaagacatcctggcgtatgccatccagcgcggt
ggaaccacattgcgcgacttcatcagccccgatggtgcgcccggctatttcgagcaggaa
ctttttgtttatgggcgcgagggcgaggcctgcaaacagtgtggacgggtcttgaaacac
gcgacgatcggtcaacgcgctacggtgtggtgcgggagctgtcagcgataa
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