Xanthomonas citri subsp. citri Aw12879: XCAW_01494
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Entry
XCAW_01494 CDS
T02519
Symbol
pnp
Name
(GenBank) Polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
xci
Xanthomonas citri subsp. citri Aw12879
Pathway
xci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCAW_01494 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xci03019
]
XCAW_01494 (pnp)
03016 Transfer RNA biogenesis [BR:
xci03016
]
XCAW_01494 (pnp)
Enzymes [BR:
xci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
XCAW_01494 (pnp)
Messenger RNA biogenesis [BR:
xci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XCAW_01494 (pnp)
Transfer RNA biogenesis [BR:
xci03016
]
Prokaryotic type
tRNA degradation factors
XCAW_01494 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
S1_2
Phage_tube
DUF7680
KH_5
Motif
Other DBs
NCBI-ProteinID:
AGI07294
LinkDB
All DBs
Position
1683722..1685836
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AA seq
704 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKVDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFKGPIGAAKVGYKNGEYILNPTVTELKDSQLELVVAG
TANAVLMVESEAELLSEEVMLGAVTFGHREMQKVINVINELTVEAGTKPSDWVAPAKNDG
MIAALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGE
LEYQTMRGSVLSTKVRIDGRALDTVRPISATAGVLPRTHGSALFTRGETQAIVITTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPTLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVQASAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcactcttgagacgggc
gaaatcgctcgccaggcaggcggcgccgtgatcgtcaaggtcgacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaagggcaggacttctttcctctgacggtc
gattatcaggagaagttctacgctggcggccgcatcccgggcggcttcttcaagcgcgaa
ggacgcgcgaccgagaaggaaacgttgatctcgcgcctgatcgatcgtccgatccgtccg
ctgttcccggaggactacaagaacgaagtgcagatcatcgccaccgtgatgtcgatgaac
ccggacatcgacggcgatatcgccgcgctgatcggcgcctcggctgcactgtcgctggca
ggcactcccttcaagggcccgatcggcgccgccaaggtcggctacaagaacggcgaatac
atcctcaacccgaccgtgaccgagctgaaggattcgcagctggagttggtcgtggccggt
accgccaacgcggtgctgatggtcgagtccgaagccgagttgctgtccgaagaagtcatg
ctgggcgcagtgacgttcggccatcgcgagatgcagaaggtcatcaacgtcatcaacgag
ctgaccgtcgaggccggcaccaagccgtccgactgggtggccccggcgaagaacgacggc
atgatcgctgccctgaaggaagcggtgggcgaccagctggcgtcggcgttccaggtgcgc
gacaagctgcagcgccgcgatgcgatttccgcgatcaagaaggacgtgctgggcgcactg
gcgccgcgcgccaccatcgaaggctgggctgccggtgatctggccaaggaattcggcgag
ctggaataccagaccatgcgtggttcggtgttgagcaccaaggtgcgtatcgacggtcgt
gcactggataccgtgcgtccgatcagcgccacggccggtgtgttgccgcgtacccatggc
tcggcgctgtttacccgcggcgagacgcaggcgatcgtgatcaccacgctgggcaccgcg
cgcgacggtcaggtcatcgacgcggtgtcgggcgagtacaaggaaaatttcctgttccat
tacaacttccctccgtactcggtgggcgagtgcggtcgtttcggtgcgccgaagcgtcgc
gaaatcggccacggccgcctggccaagcgcggcgtgctggcagtgatgccgaccctggaa
gaattcccgtacaccatccgcgtggtctcggaaatcaccgaatccaacggttcgtcctcg
atggcatcggtctgcggcagctcgctggcgctgatggatgctggcgtgccgatcaaggcg
ccggtcgcgggtatcgcaatgggcctggtcaaggaaggcaacgacttcgtcgtgctctcc
gacatcctgggtgacgaagatcacctcggcgacatggacttcaaggtggccggtactgcc
gaaggcgtgtccgccctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggcattgcagcaggccaaggctggccgtctgcacatcctgggcgagatggcgcat
gcgctgaccaccccgcgtcaggagctgagcgactacgcgccgcgcctgctcaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggctcgaccatccaggccatc
accaaggaaaccggcacgcagatcgacatccaggacgatggcacgatcatcatcgcctcg
gtcaatgccatcgctgcgcaggctgcgaagtcgcgcatcgaacagatcacctcggacgtg
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
accatcctgccgggcaaggacggcctggtgcacgtctcgcagatttccagcgagcgcgtg
gagaaggtcggcgacaagttgaaggaaggcgatctggtccgcgtcaaggtgctggaagtg
gacaagcagggccgcatccgcctgtcgatcaaggcagtggaagaaggcgaaggcgtgcag
gcgtcggccgagtaa
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