Xanthomonas citri subsp. citri Aw12879: XCAW_02726
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Entry
XCAW_02726 CDS
T02519
Symbol
sbcB
Name
(GenBank) Exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
xci
Xanthomonas citri subsp. citri Aw12879
Pathway
xci03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
XCAW_02726 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xci03400
]
XCAW_02726 (sbcB)
Enzymes [BR:
xci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
XCAW_02726 (sbcB)
DNA repair and recombination proteins [BR:
xci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
XCAW_02726 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XCAW_02726 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XCAW_02726 (sbcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
BON_like
Motif
Other DBs
NCBI-ProteinID:
AGI08504
LinkDB
All DBs
Position
3051064..3052509
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AA seq
481 aa
AA seq
DB search
MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV
TGITPQHALREGVTEAEAFARIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYER
EWRGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSD
VYATIGMARKFQQHQPKLWDYALRLRDKRFAAALLDVIAMQPVLHVSQRYPASRLCAAAV
LPLTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNK
SPALVAWQHLRAADFERLGVDHDAVVAKAARLRALGPELAEKVRQVYGSERAAAAAVNDA
DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE
QERWNVYRRQRLLQDRGLGEVTLEQYHAQIADLRGAHPDDATKQALLDQLAAWGSDLQRT
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacagctttctcttctacgacctggaaaccttcggccaggatccacgccgcacc
cgcattgcacagttcgctgcagtgcgcaccgacgcgcaactgcgcgtgatcgaagagccc
atcagctttttcgtgcagccggccgacgatctgctgccctcgccctacgccaccatggtg
accggcatcaccccgcagcacgcgctgcgcgaaggcgtcaccgaggccgaggcgttcgca
cgcatcgccgaacagatgggccgaccgcagacctgcacgctgggctacaactcgatccgc
ttcgacgacgaattcatccgctgcggcctgttccgcaatttctacgacccgtacgagcgc
gagtggcgtggcggcaattcccgctgggatttgctggatgtgctgcgactggtacacgcg
ctgcgcccggacggcatcgtctggccacagcgcgaagatggcgccacctcgttcaagctg
gagcacctggccgatgccaacgatgtgcgcgaaggcgatgcgcacgaagccttgtcggac
gtgtacgccaccatcggcatggcgcgcaaattccagcagcaccagccgaagttgtgggac
tacgcgctgcgcctgcgcgacaagcgctttgcagccgccttgctggatgtcattgcgatg
caaccggtgctgcatgtttcgcagcgttaccccgcctcgcgcctttgcgctgcggcggta
ctgccgctgacgcgccacccgcgcatcgacagccgcgtgatcgtattcgatctggagggc
gacccggaggtgctgttgcggctcagccccgacgatattgcagaccgcctgtatatccgc
gccgcggatttgccggaaggcgaacagcgtatcccgctaaaggaagtgcatctgaacaag
tcgcccgcgctggtagcctggcagcatctgcgcgctgcggatttcgagcgcctgggtgtg
gatcacgacgcggtagtggccaaggcggcacggttgcgcgcattgggccctgaacttgcc
gagaaggtgcgccaggtctacggcagcgaacgcgccgcggccgcggcggtcaacgatgcc
gacgcctcgctctacgatggctttctagccgaaggcgacaaacgcctgcttgcgcaggtc
cgcgccagcgcgccggacgaactgggcgcgctggaagcgcgctttcgcgatccgcgcctg
atcgagctgctgtttcgctaccgcgcgcgcaactggccgcagacactctcgttcgaggaa
caggagcgctggaacgtgtatcgccgccagcgcctgctccaagaccgcggcctgggcgaa
gtcaccctggagcaataccacgcgcagatcgcggatttacggggtgctcaccccgacgat
gctaccaagcaagccctactcgaccagctcgccgcctggggttcggacctccaacgcacg
ctatga
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