Xanthomonas citri subsp. citri Aw12879: XCAW_02938
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Entry
XCAW_02938 CDS
T02519
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xci
Xanthomonas citri subsp. citri Aw12879
Pathway
xci03030
DNA replication
xci03430
Mismatch repair
xci03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XCAW_02938 (dnaE)
03430 Mismatch repair
XCAW_02938 (dnaE)
03440 Homologous recombination
XCAW_02938 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xci03032
]
XCAW_02938 (dnaE)
03400 DNA repair and recombination proteins [BR:
xci03400
]
XCAW_02938 (dnaE)
Enzymes [BR:
xci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XCAW_02938 (dnaE)
DNA replication proteins [BR:
xci03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XCAW_02938 (dnaE)
DNA repair and recombination proteins [BR:
xci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XCAW_02938 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AGI08714
LinkDB
All DBs
Position
3276874..3280464
Genome browser
AA seq
1196 aa
AA seq
DB search
MSTSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVMIATPDMTPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAIHPEWLQAGHANLFALAGRDSLAGRLFNEGRADLAEQQLADWQRVFGDGLHL
ELTRTGRDGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEARVCISSGRVLDDP
KRPRDYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFLPAYPVPEDET
LDTWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVADFIQW
GKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLVDSVAKLIPNILGIT
LKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVIAPDPLS
EFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINVRHARA
GIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQEQVMQMAQIVGDYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVKPPRVNESAYMFEA
ASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTRVGTAKLNRRTLEAMINA
GAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSAPAMRLDLPESKEWP
LGQLLTGERETLGFYLSGHPFDPHRDEVRELVGCDLGALEKILASQQRGGGGGGGDGEKR
AWRPEVGAILAGQVVGVRRKGDSQVFVQLEDGRGRVECSAFSDAMAEFGHLLTRDRILIV
KGGLREDEFNGGYSLRIRQCWDYEQICADHAQRLSLRLDLREKQAFKRIDALLAKHRPGK
TPLRLDLLLRAPSGGVAGMLDLNGNHSVRIDQQLMDSLRADPAVRTVKIKYSPPWA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttcccgcttcgtccatctgcacgtccacaccgagttctcgctggcggattcc
accatccgtgtgcccgagaaaccggatcaggctgacccgaaaaaagccaagcaggccaac
ctgctgagccgggcagtcgaactcgacatgcccgcgctggcagtcaccgacctcaacaac
ctgttcgcgctggtcaagttctacaaggccgccgaaggcgtcgggatcaagccgatcgcc
ggcgccgacgtgatgatcgccacgccggacatgacgccgtggcgcatgaccctgctgtgc
cgcgaccgtgaaggctacctgagcctgtcgcggctgctcacccgcgcctggatggaaggc
caccgccccgaaggcggcgtggcgatccatccggaatggctgcaggccgggcacgccaac
ctgtttgcgctggccggccgcgacagcctggccgggcgcctgttcaacgagggccgcgcg
gatctggccgagcaacagctggccgactggcagcgcgtgttcggcgatggcctgcacctg
gagctcacccgtaccggccgcgatggcgaggaacgcttcaaccagttcgcgctgcacgcc
gcgggcgtgcgcgggctgccggtggtggcgagcaacgacgtgcgttttctgtacgccagc
gacttcaatgcgcacgaagcgcgcgtctgcatttcctccggccgcgtgctggacgatccc
aagcgcccgcgcgactacagcgaccagcaatacatgaagtccagcgaggagatggcggcg
ctgttcgccgacatccccgacgccatcgacaacacccacgcgctggcgcagcgctgcaac
atcgagatgcgcctgggcacctacttcctgcccgcctacccggtgccggaagacgaaacg
ctggacacctggatccgcagccagtcgcgacagggtctggccgcacgcctggaaaagaac
ccgatcgcgccgggcaagacccgccaggactatgtggaccggctcgaattcgagctggac
accatcatcaagatgggctttcccggctacttcctgatcgtggccgacttcatccagtgg
ggcaaaaaccagggcattccgatcggcccgggccgcggttccggtgccggctcgctggtg
gcctgggcgctgcagatcaccgacctggacccactgccgtacaacctgctgttcgagcgc
ttcctgaatccagagcgcgtgtcgatgcccgacttcgatatcgacttctgcatggaccgg
cgcgacgaagtcatcgactacgtggcgcgcaagtacggccgcgaacgcgtcagccagatc
atcacctacggcaccatggccgccaaggcggtggtgcgcgatgccggccgcgtgctgggc
ttttcgtatgggttggtcgacagcgtggccaagctgatccccaacatcctgggcatcacg
ctcaaggacgcgatgggcgaaggcaaggactcggagatggcctcgccggatctgatccag
cgctaccaggtcgaagacgacgtgcgcgacctgatggatctggcgcgccagctcgaagac
ctcacccgcaacgccggcaagcacgccggcggcgtggtgatcgcgcccgatccgctttcc
gagttctgcccgctgttcgccgaacacgacgaagacggccgcggcaagaacccggtgacc
cagttcgacaaggacgacgtcgaggcggtgggcctggtgaagttcgacttcctcggcctg
cgcacgctgaccatcatcgattgggcggtcaaggcgatcaacgtgcgccatgcgcgcgcc
ggcatcgacccggtcgacatcaccgccattccgctcgacgacgtgcccacctacaagggc
gtgttcgcctcgggcaataccggtgcggtgttccagttcgaatcctcgggcatgcgccgc
ctgctcaaggacgcgcgcccggaccgcttcgaagacctgatcgcgctggtgtcgctgtac
cgtcctggcccgatggacctgatcccggacttcaacgcgcgcaagcacggccagcaggag
atcgtctaccccgatccgcgcaccgaagtcatcctgaaagacacctacggcatcatggtg
tatcaggagcaggtgatgcagatggcgcagatcgtcggcgattattcgctgggcggcgcc
gacctgctgcgtcgcgcgatgggcaagaaggtgccggccgaaatggccaagcaccgcgaa
atcttccgcgaaggtgcggccaagggcggcgtgagcgcagccaaggccgacgaaatcttc
gacctgatggagaagttcgccggctacggcttcaacaagtcgcacgccgccgcctacgcg
ctggtcagctaccagaccgcgtggctgaaacggcattacccggccgaattcatggccgcc
acgctgtcctcggacatggacaacaccgacaaggtggtgggctttctggatgaggtgcgc
aacctcggcctcaccgtcaaaccgccgcgcgtcaacgagtcggcgtacatgttcgaggcc
gccagcccggacaccatccaatacggcctgggcgcgatcaagggcgtcggccagggcgcc
tgcgaggcaatcgtcgaagaacgccagcgcggcggtccctacaccacgctgctggatttc
tgcacgcgcgtgggcaccgcaaagctcaaccggcgcacgctggaagcgatgatcaatgcc
ggcgccatggatggcctgggcaagaaccgtgcctcgctgatgctgcagttgccggaggtg
atgaaggccaccgagcagatggcgcgtgagcgcgcctccgggcagaactcgctgttcggc
gggccggacccgagcgcaccggcaatgcgcctggacctgcccgaaagcaaggaatggccg
ttgggccagctgctcaccggcgagcgcgaaacgctgggcttctacctcagcggccacccg
ttcgacccgcaccgcgacgaagtccgcgagctggtcggctgcgacctgggtgcgctggaa
aagatcctggcctcgcaacagcgtggtggcggtgggggcggcggcgatggcgaaaaacgc
gcctggcgcccggaggtcggcgccattcttgccggccaggtcgtcggcgtgcgccgcaag
ggcgacagccaggtgttcgtgcagctcgaagacggccgcggccgggtcgaatgcagcgcg
ttctccgacgcgatggccgagttcggccacctgctcacccgcgaccgcatcctgatcgtc
aagggcggcctgcgcgaggacgaattcaacggcggctacagcctgcgcatccgccagtgc
tgggactacgagcagatctgcgccgaccacgcgcagcggctgtcgctgcgcctggacctg
cgcgagaagcaggccttcaagcgcatcgacgccctgctggccaagcaccgccccggcaag
acgcccctgcgcctggacctgctgctgcgcgcgcccagcggcggtgtggccggcatgctc
gacctcaacggcaaccactcggtgcggatcgaccagcagctgatggacagcctgcgcgca
gaccctgcggtgcggacggtgaagatcaagtacagccctccgtgggcgtga
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integrated database retrieval system
