Xanthomonas citri subsp. citri Aw12879: XCAW_03408
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Entry
XCAW_03408 CDS
T02519
Symbol
hrpA
Name
(GenBank) HrpA-like helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xci
Xanthomonas citri subsp. citri Aw12879
Brite
KEGG Orthology (KO) [BR:
xci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xci03019
]
XCAW_03408 (hrpA)
Enzymes [BR:
xci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
XCAW_03408 (hrpA)
Messenger RNA biogenesis [BR:
xci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
XCAW_03408 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
nSTAND3
NACHT
SRP54
ResIII
Cas3-like_C_2
AAA_23
T2SSE
AAA_25
TsaE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AGI09183
LinkDB
All DBs
Position
complement(3817044..3821165)
Genome browser
AA seq
1373 aa
AA seq
DB search
MSAIDSTLADTLRERRRAVDGAMSRDRGRLLGLWSRWQGKPGNPQVRDAFEQALAASQAQ
RQARAEQQPAITLDDQLPIAREAERIIALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
AAGMIGCTQPRRIAARAVAARVADELKTPLGTTVGFQVRFTDRVSDQSRIKFMTDGILLA
EIASDRWLSSYDTIIVDEAHERSLNIDFLLGYLKQLLHKRSDLKLIVTSATIDTERFAQH
FDNAPVISVEGRTFPVEVRYRPLEGDTGDGDEGEHGSGRDGERSVNDAIVAAIDEITRID
PRGDVLMFLPGEREIRDAHQSLERRKYRETEVVPLYARLSAADQDHVFNPGPRRRLVLAT
NVAETSLTVPRIRYVVDPGLARVKRYSPRQKLDRLHIEPISQASANQRMGRCGRIAEGIC
YRLYAEADFAARPAFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQQ
LLELGAIDTQRRLTATGRQMARLPVDVKLARMLVAAQQHGCLREMIIIAAFLGIQDPRER
PPEAREAADNAHALFADARSEFVGILRLWDAYRQVHEDLTQSKLRDWCNRHFLGFLRMRE
WRELHRQLRLLCEELGWSEEPANAMLAPLLAGASAPAREDGHNANRPTRGQLHRAARLAR
EGKPDPNAAPATPAPAAVNQPAEAAEASARSSERERAAAYQALHRALLAGLPTQIGHRTE
KGDYLAARQRRFVPFPGSALARKPPPWILAATLLDTQKVWGMTNAAIEPDWAIAELPHLL
ARKHFDAHWSRAQGQVVASEQISLFGLVLAPKKPVHFGKIDPAAAHDLFVRQGLVTGEIN
TRAAFVADNLKVLEQAREEEAKLRRAGIVADEGWQARWYLDRIPAELHSASGLDAWWKTL
PPDKRRSLHWSLNDLLPGEGSEADRFPKYFPLGDARLPLHYRFEPGAVDDGVTLDVPLHL
LNALDPSRLSWLAPGFVADKASALIRSLPKAQRRNYVPAPDFGRAFYEAYSVASADDIRG
ELARFLTKATGTQVTALDFDEQALDTHLLMNLRLRDDDGKVLAESRDLDGLRARFGERAG
QAFAARAGRALAVEGLRDFPSAPIPEQVAGEAGVPAYPALVDQGDNAALRIFADRNEAAR
AHPRGVRRLLEIALADKIKQARKQLPVSPKTGLLYAAIESQERLRGDLVDAALNAVLADG
LGAIRDPGAFAQRRDDASKRLFGEAMERLKLAESILSAVAELKPLLEAPLMGWARGNLDD
MEQQLRALVHAGFLRDTPADALANYPRYLRAMILRTERAKRDPARDQARMLELKPFVDAV
EEAAARGLQNRQEWQALRWDLEELRVSVFAQELGAKSGVSAKKLSQRVAALRS
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctatcgactccacccttgccgacaccttgcgtgagcgccgccgtgccgtggat
ggcgcgatgagccgcgaccgtggccgcttgctgggcctatggtcgcgctggcagggcaag
ccaggcaacccgcaggtgcgcgatgcgttcgagcaggcactggcggcatcgcaggcgcaa
cgccaggcacgggccgagcagcagccggccatcacgctggacgaccagttgccgattgcg
cgcgaggccgagcgcatcatcgcgctgatccgcgaccatcaggtggtggtcatcgccggc
gaaacaggctcgggcaagaccacccagctgcccaagctgtgcctggcggccggacgcgga
gccgccggaatgatcggctgcacccaaccacgccggatcgccgcgcgcgcggtggccgcg
cgcgtggccgacgagctgaagacgccgttgggcaccacggtgggcttccaggtgcgcttc
accgatcgcgtcagcgatcagtcgcgcatcaagttcatgaccgacggcatcctgctggcg
gaaatcgccagcgaccgttggctgtcgtcctacgacaccatcatcgtggacgaggcgcac
gagcgcagcctcaatatcgatttcctgctgggctatctcaagcagttgctgcacaagcgc
tccgatctcaagttgatcgtcacctcggccaccatcgacaccgagcgctttgcgcagcac
ttcgacaacgcgccggtgatcagcgtggaaggccgcaccttcccggtcgaggtgcgttat
cgcccgctggaaggcgatacgggcgacggcgacgagggagaacacggcagcggccgcgac
ggcgagcgcagtgtcaacgatgcgatcgtggcggccatcgatgagatcacccgcatcgac
ccgcgcggcgatgtgctgatgttcctgccgggcgagcgcgagattcgcgatgcgcaccag
tcgctggaacggcgcaaataccgcgaaaccgaagtggtgccgctgtatgcgcggctgtcg
gcagccgatcaggaccacgtgttcaacccgggcccgcgccggcgcttggtactggccacc
aacgtggccgaaacgtcgctgacggtgccgcgcatccggtatgtggtggacccggggctt
gcccgcgtcaagcgctacagcccgcgccagaagctggaccgcctgcatatcgagccgatc
tcgcaggccagcgccaaccagcgcatgggccgttgcgggcgtattgctgagggcatctgc
taccggctgtatgccgaagcggactttgccgcgcgtccggcattcaccgatccggaaatc
cgacgttcctcgttgtccggggtgatcttgcgcatgctgcagctggggctgggcaggatc
gaagacttcccgtttctggaagcacccgacgaacgtgcggtggccgatggttggcaacag
ctactggagctgggcgccatcgatacgcagcggcgtctgaccgcgaccggccgccagatg
gcgcgcctgccggtggacgtcaagctggcgcgcatgctggtggccgcgcagcaacatggg
tgcttgcgcgagatgatcatcatcgccgcattcctgggcatccaggatccgcgcgagcgc
ccgccggaggcgcgcgaagcggccgataacgcgcatgcgctgtttgccgatgcgcgctct
gaattcgtcggcatcctgcgcttgtgggatgcgtaccggcaggtgcatgaagatcttacc
cagtccaagctgcgcgactggtgcaaccggcatttcctcggtttcttgcgcatgcgcgag
tggcgcgagctgcatcggcagctgcggttgctgtgcgaagaactgggctggagcgaagag
ccggccaacgcgatgctggcgccactgctggccggtgccagtgcgcccgcccgcgaagac
ggccacaacgccaaccgacccacgcgtggccagctgcaccgtgccgcgcgactggcgcgc
gaaggcaagcccgatcccaacgcagcgcctgcgacacccgcgccggctgcggtgaaccag
ccggccgaagctgccgaagcatcggcccgtagcagcgaacgcgaacgtgcggcggcctat
caggcgctgcaccgcgcactgttggcggggctgccgacccagatcggccaccgcacggaa
aagggcgactatctggccgcgcggcaacgccggttcgtgccgttcccgggttcggcgctg
gcgcgcaaaccgccgccgtggattctggccgccacgttgctggacacgcagaaagtgtgg
ggcatgaccaatgccgcgatcgagccggactgggccattgccgagctgccgcatctgctg
gcgcgcaagcatttcgatgcgcactggtcgcgtgcgcaggggcaggtggttgcttcggaa
cagatcagcctgttcgggctggtgctggcgccgaaaaagcccgtgcatttcggcaagatc
gacccggccgcagcgcatgacctgttcgtgcgccaaggcctggtgacgggtgaaatcaat
acgcgggccgcattcgtggccgataacctcaaagtgctcgagcaggcacgcgaagaagag
gccaagttgcgtcgcgccggtatcgttgccgacgaaggctggcaggcgcgctggtatctg
gatcgcattcctgccgagctgcattcggccagcggcttggatgcgtggtggaagaccttg
ccgccggacaaacgccgcagcctgcattggtcgttgaacgatctgctgccgggcgaaggc
agcgaagccgatcgctttccgaagtatttcccgcttggcgatgcgcgcctgccgttgcat
taccgtttcgagccgggtgccgtcgacgacggcgtgaccctggatgtgccattgcacttg
ctcaatgcgctggatccttcgcgcctgtcgtggctggcgccgggattcgttgccgacaag
gcgtctgcgttgattcgtagcctgcccaaggcgcaacgccgcaactacgtgccggcaccg
gatttcgggcgcgcgttctacgaggcctacagtgtggcctcggccgacgatattcgtggc
gagctggcgcgctttctgaccaaggccaccgggacgcaggtcaccgcgctggatttcgat
gagcaggcgttagacacgcatctgctgatgaacctgcgcctgcgcgacgacgacggcaag
gtgttggccgagtcgcgcgatctggacgggctgcgcgcgcgctttggcgagcgtgctggc
caggcattcgccgcgcgggccggacgcgcgctggccgtcgagggcctgcgtgattttccg
agcgcgccgattcccgagcaggtggcaggcgaagccggcgtcccggcgtacccggcgctg
gtggatcagggcgacaacgcggcgctgcgcatcttcgccgaccgcaacgaagcggcgcgg
gcgcatccgcgcggcgtgcggcgcttgctggaaatcgcattggccgacaagatcaaacag
gcacgcaagcaactgccggtgtcgcccaagaccgggctgctgtatgcggcgatcgaatca
caggaacgcttgcgtggcgatctggtcgatgcggcgctcaacgccgtgctggccgatggc
ctgggcgccattcgcgaccccggcgcatttgcgcagcgccgagacgatgcgagcaagcga
ctgttcggcgaagcgatggagcgcttgaagctggccgaaagcatcctgagcgccgtggcc
gaactcaagccactgttggaagcaccgttgatgggctgggcacgcggcaatctggatgac
atggagcagcaactgcgcgcgctggtgcatgcaggcttcctgcgcgacaccccggccgac
gcattggccaattatccgcgctacctcagggcgatgatcctgcgcaccgaacgcgcaaag
cgcgatcctgcgcgcgaccaggcgcgcatgctcgagctcaaaccgttcgtggatgcagtg
gaagaggccgccgcgcgcggtttgcaaaaccgccaagagtggcaggcgctgcgttgggat
ctggaagagctgcgcgtgtcggtatttgcgcaggagctgggtgcaaaatccggcgtttcg
gcgaagaaactgtcgcaacgggtggctgcattgcgcagctga
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integrated database retrieval system
