Xanthomonas citri subsp. citri UI6: J158_03669
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Entry
J158_03669 CDS
T03894
Name
(GenBank) Rhamnogalacturonase B, N-terminal
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
xcj
Xanthomonas citri subsp. citri UI6
Brite
KEGG Orthology (KO) [BR:
xcj00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
J158_03669
Enzymes [BR:
xcj01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
J158_03669
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Gene cluster
GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
PapC_N
Motif
Other DBs
NCBI-ProteinID:
AJY88034
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Position
4119331..4121016
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AA seq
561 aa
AA seq
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MRTVSVFSTRLASRARIATMPCFRTLTRVPRNRPHTFACALLLYAGVSAPALADFGISRS
GDRVIVDSGAELVFAVDARNGDIVSMRYRDNELQTTESKGSHIASGLGSASVDARIVGGT
IVVSAKAGDLVQYYIARKGRNAIYMATDAPSLMPVGELRFVARLNVSTLPNAQQEPDSNV
GKAIEGNDVFLLPDGRTSSKFYSARRMMDDQVHGVSGSGVAVFMLTGNRERSAGGPFFKD
IATQKTSVTHELYHYMYSDHTQTEAFRGGLHGVYGLLFTDGSSPSSAQLDTAFVDATLGL
SGYLPASGRGTVSGHVGGVLPGQPAVIGLRNAQAQYWATADGSGDYRVTGVRPGSYRMTL
YQNELDVAQRNIEVSAGATAHAALQAVVLPGTVKWQIGIPDGTPAGFRYADLLPRAHPSD
ARMHWSAVTYTVGSSSLSSFPAVQWRGINTPSRIDFTLPANEVRGYRLRIFVPLAQGSAR
PQISVNARWNGSVPAAPTQPKTRGITRGTARGNNTLYEVDIPASALHAGNNRIEIGIASG
SPDNGYLSPAIVFDSIQLVAL
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcacagtctccgtcttcagcactcgcctggcatcgcgcgcacgcatcgcgaccatg
ccttgcttccggacactcacccgcgtgcctcgcaatcgtccacataccttcgcctgcgcg
ctgctgctctatgccggcgtcagcgcacctgcgctggccgacttcgggatcagccgcagc
ggcgaccgcgtgatcgtcgacagcggcgccgagctggtgtttgcggtcgatgcccggaat
ggcgacatcgtctcgatgcgctatcgcgacaacgaactgcagaccaccgaatcgaagggc
tcgcacatcgcttcggggctgggcagtgccagtgtggatgcacgcatcgttggcgggacg
atcgtggtgtcggccaaggccggcgacttggtccagtactacatcgcgcgcaagggccgc
aacgcgatctacatggccaccgatgcgccaagcttgatgccggtgggcgaattgcgcttc
gtcgcccgcttgaacgtgtccacgttgccgaatgcgcagcaggagcccgattccaatgtc
ggcaaagcgatcgaaggcaacgatgtctttctattgccggatgggcgcaccagttccaag
ttctattccgcccgtcgaatgatggacgaccaggtgcatggcgtcagcggctctggcgtt
gccgtgttcatgctgacgggcaaccgcgagcgcagcgcgggcggcccgttcttcaaggac
atcgcgacacagaaaaccagcgtgacgcatgagctctatcactacatgtattccgatcac
acccagaccgaagcgtttcgcggcggcctgcacggtgtgtacgggctgctgttcaccgat
gggagctcgccgtcgagtgcgcaactggacaccgccttcgtcgatgccacgctgggcctg
agcggttatttgccggcaagcgggcgcggcaccgtgagcgggcacgtcggcggcgtgttg
ccgggccagccggccgtcatcggtctgcgcaatgcgcaggcgcagtactgggccactgcc
gacggcagcggcgactaccgggtgacgggtgttcgcccgggcagctatcgcatgacgctc
taccagaacgaactagacgtcgcacaacgcaacatcgaggtttccgccggcgccactgcg
cacgccgcactgcaggcagtcgttttgccgggcacggtgaagtggcagatcggcattccc
gatggcacgccggcagggttcagatatgcggacctgttaccgcgggcgcacccttccgat
gcgcgcatgcactggtctgcggtgacctacaccgtgggatcgagcagcctgagcagcttt
ccggcggtgcagtggcgcggcatcaacaccccgagccggatcgacttcaccctgcccgcc
aacgaggtgcgcggctatcgcctgcgtatcttcgtgccgttggcacagggcagcgcacgt
ccgcagatcagcgtgaatgcacgctggaacggctcggtgcctgccgcgcccacgcagcca
aagacacgcggcatcacgcgcggcactgcgcgtggcaacaacaccctgtacgaagtggac
atccccgcctctgccttgcatgccggcaacaaccgcatcgagatcggcattgcctccggc
tccccggacaacggttacctcagcccggcaatcgtgttcgacagcatccagctggtagcg
ttatag
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