Xanthomonas citri subsp. citri UI6: J158_04098
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Entry
J158_04098 CDS
T03894
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xcj
Xanthomonas citri subsp. citri UI6
Brite
KEGG Orthology (KO) [BR:
xcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xcj03016
]
J158_04098
Enzymes [BR:
xcj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J158_04098
Transfer RNA biogenesis [BR:
xcj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J158_04098
Prokaryotic type
tRNA splicing ligases
J158_04098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
Motif
Other DBs
NCBI-ProteinID:
AJY88454
LinkDB
All DBs
Position
4609312..4610535
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AA seq
407 aa
AA seq
DB search
MSTSQHFEFLHAEGSTTPIKGWVRGVPLEEQAHAQLRNIAAVPFVGPWVAVMPDVHLGKG
ATVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAADLPDNLAQLRASIERSVPVGNGRG
GEHRKLPDSIESRIAQSGLVQRLDAIKQQHKRIRTDKLDCQIGTLGGGNHFIEICLDGTD
AVWVMLHSGSRGTGNLIGTYFIERAREQLAHRVLGFHLPDKDLAFFMQGEPLFDEYVEAV
SWAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHGGEELLITRKGA
VSARAGELGIIPGSMGTRSYIVRGLGNADSFHSCSHGAGRVMSRTAARAQITLAQHREAT
AHVECRKDAAVIDESPAAYKSIDAVMAAQQDLVEVLHTLRQVVCIKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatcgcaacactttgaatttctgcacgccgaaggcagcacgaccccgatcaag
ggctgggtacgcggcgtgcccctggaagaacaggcacatgcgcagctgcgcaatatcgcg
gcggtaccgtttgtcggtccgtgggtcgcggtgatgccagacgtgcatctgggcaagggc
gcaaccgtgggctcggtgattccgacccgtggcgccatcatcccggcggcggtcggcgtg
gatatcggctgcggcatggctgcagtgcgcaccacactgcgcgccgccgacctgcccgac
aatctggcgcagttgcgtgccagcatcgagcgcagcgtgccggtgggcaacggccgtggc
ggcgagcatcgcaagctgccggacagcattgagagccgcattgcgcagtccgggctggtg
cagcgcctggatgcgatcaagcagcagcacaagcgcatccgtaccgacaagctggactgc
cagatcggcacgctgggcggcggcaaccacttcatcgagatctgcctggacggaaccgat
gcggtatgggtgatgctgcacagcgggtcgcgcggcaccggcaacctgatcggcacgtac
ttcatcgagcgcgcgcgtgagcaactggcacatcgcgtgctgggcttccatctacccgac
aaggacctggccttcttcatgcagggcgagcccttgttcgacgaatacgtcgaagcggtg
tcgtgggcgcaggattacgcccgcgaaaatcgtgaggcgatgatggcgcgcgtgctggcc
gagatgcgtcaccgcctgccgaaattccagctggaaaagctcgcagtcaattgccaccac
aactacgtgcagaaggaaacgcacggtggcgaggaattgttgatcacccgcaagggagcg
gtgagcgctcgtgccggcgagctgggcatcattccgggtagcatgggcacgcgcagctac
atcgtacgtgggttgggcaatgccgacagtttccacagctgcagccacggcgcagggcgt
gtgatgagcaggaccgctgcacgcgcgcagatcaccctggcacagcatcgggaggccacc
gcacatgtggaatgccgcaaggacgcggcagtgatcgatgagtcgcctgcggcgtacaag
tccatcgatgcggtgatggcggcgcagcaggatctggtcgaggtgctgcacaccttgcgc
caagtggtgtgcatcaagggatag
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