Candidatus Xianfuyuplasma coldseepsis: G4Z02_02885
Help
Entry
G4Z02_02885 CDS
T08386
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
xcl
Candidatus Xianfuyuplasma coldseepsis
Brite
KEGG Orthology (KO) [BR:
xcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xcl03009
]
G4Z02_02885 (rlmD)
Enzymes [BR:
xcl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
G4Z02_02885 (rlmD)
Ribosome biogenesis [BR:
xcl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
G4Z02_02885 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_15
Methyltransf_31
Cons_hypoth95
Methyltransf_25
MTS
Methyltransf_11
Methyltrans_SAM
FtsJ
Methyltransf_12
PrmA
Motif
Other DBs
NCBI-ProteinID:
QMS84740
UniProt:
A0A7L7KPM5
LinkDB
All DBs
Position
complement(618389..619753)
Genome browser
AA seq
454 aa
AA seq
DB search
MEPLLEKQQTILLTIKRLGINGEGIGYYKRKAVFVPGAIPPEEVIVRITKVSDKYAEGEI
VKFNIKAAKRVKPFCKHYYQCGGCQLQHVAYDEQLLLKEEMLQQAIERYSNVDVASITFN
DMVGMNTPRHYRHKAQMPVENTKHGITTGLYKVNSNDLVPIIDCPVQAEHINLVNQRILE
ICDTHSIYAFDPKTMRGLLRYIVTRESHHTGEIQVTLIITIFNKALHQVAQDILQLPNVV
SVGISKNHDVKNIEIFGEDVEILAGKNTIAEGIGDIQYDLKPKAFYQLNPSQAIQLYSYV
KSLLDFDTDQTIIDAYSGAGAISMYLAPYAKRVIGIDSSKESIYSALHNRKINKFDNVDF
INGEVKTALPKLYDKGITPDVIIIDPPRSGLDNKTLDLLTRKPVSKVIYVSCNPSTLGKN
LKVLTRKYKVLSVTPFDMFPHTSHIESVTLLVKK
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggaacctttattagaaaaacagcaaaccattttactcaccattaagcgattaggaatt
aatggtgaaggaattggatattataagcgcaaagccgtttttgttccaggtgcaataccc
ccagaagaagtgattgttcggattacaaaagtgtccgataagtatgccgagggagaaatt
gttaagtttaatatcaaagcggcgaagcgagtgaaaccgttttgcaaacattactatcaa
tgtggtggatgtcaattacaacatgttgcatatgatgaacaactcttattaaaagaagag
atgcttcaacaagccattgaacgctatagcaatgtggatgtagcatccattacgtttaat
gatatggtcggcatgaatactcctcgtcattatcgccataaagctcaaatgcctgtagag
aatacaaagcatgggattactacggggttatacaaggtgaactccaatgatcttgtacca
attatagactgtcctgtacaagcagagcatatcaaccttgtaaatcaacgcattcttgaa
atatgcgatacgcactccatttatgcatttgatccaaaaacaatgcgtggattattacgt
tatattgttactcgtgaatcgcatcatactggagaaatacaagtaaccttaattatcacg
atatttaataaggcccttcatcaggtagctcaagatatcctccaattacccaatgttgtg
agtgtcggtatatcaaaaaatcacgatgtcaaaaacattgagatttttggcgaagatgtg
gagattttagcagggaaaaacaccatagctgaaggaattggagatatccaatatgacctt
aaacctaaagccttttatcagttgaatccaagtcaagcgatacaactatattcctatgtg
aaatccttactagattttgacaccgatcaaaccattattgacgcatattctggagctggt
gccatcagtatgtatcttgccccttatgccaaacgagtgataggtattgattccagtaaa
gagtcgatatatagtgctctacataatcgaaaaattaacaaatttgataacgttgatttt
atcaatggtgaagtcaaaactgcacttcccaaattgtatgacaaaggtattactccagat
gtgattattattgatccaccgcgcagtggattggataataagacattggatcttctcaca
agaaaaccagtgagtaaagtcatctatgtctcatgtaatcctagtacattaggaaaaaat
cttaaagtactaactcgcaagtataaagtcttgtctgtaacgccatttgacatgttccca
catacatctcacatcgaatctgtgacattattggttaaaaagtaa
DBGET
integrated database retrieval system
