Candidatus Xianfuyuplasma coldseepsis: G4Z02_05080
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Entry
G4Z02_05080 CDS
T08386
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xcl
Candidatus Xianfuyuplasma coldseepsis
Pathway
xcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G4Z02_05080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcl03019
]
G4Z02_05080
03009 Ribosome biogenesis [BR:
xcl03009
]
G4Z02_05080
Enzymes [BR:
xcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G4Z02_05080
Messenger RNA biogenesis [BR:
xcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G4Z02_05080
Ribosome biogenesis [BR:
xcl03009
]
Prokaryotic type
rRNA helicases
G4Z02_05080
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
AAA_22
Cas3-like_C_2
SwrA
Arginosuc_synth
Motif
Other DBs
NCBI-ProteinID:
QMS85142
UniProt:
A0A7L7KSA4
LinkDB
All DBs
Position
1077545..1079155
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AA seq
536 aa
AA seq
DB search
MLLQKGGIIIQYNNQKIEQALTEMGFDEFTPIQTQTIPLIQEGHDVIGHSQTGTGKTAAF
AIPMLEQLDFESDKIQAIILCPTRELAVQVKGEIDRIGTYFPHLKTLAVYGGESIHKQIQ
GLKHKPQIIVGTPGRTIDHINRKLIRLGHVKYFVLDEADEMLKMGFIEDIETILEATNKD
KQMVMFSATMAKPIIRITKRYMNNPKLISVITDEETNKDITQYYYQVQDKNKVEAIGRLL
HVYNPKLTLIFCNTKRKVDTVTRELTKKGYNVDKIHGDLQQTARLHVLDKFHTGVLDLLV
ATDVAARGLDIKNVEAVINYDVPEKAEFYVHRIGRTGRIGNKGYSFTLVSRKDLGNLEEI
FTFTKSTIKKRNIPTPEKVISVRQQKQAEEVHDIITNINTNPHFDLASQLLNENDATDVV
QALLHKLSKNDSSNKVNGDINESFQKGHKNKSSDKGQMTRYHLNVGKVQGVTPKSLSQLI
MKKTKLHNSQIDQIYVTRTSAFFSTKSSKMNQVMKNLSNITVGGKRTSIRLAKEQQ
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
ttgcttcttcaaaaaggaggaattattatccaatacaataatcagaaaatagaacaagca
ttaaccgaaatgggatttgacgagtttactcccattcaaacacaaacaatcccacttatt
caagaaggtcatgacgtgattggccattctcaaacaggaacaggaaaaaccgcagcattt
gcgattccaatgttggaacaactggattttgaatcggacaagattcaagcaattatcctt
tgtccaacccgtgaacttgccgtccaagtaaaaggtgaaatcgatcgcatcggaacctat
ttccctcatctcaagacccttgccgtatacggcggagagtcgattcataaacaaattcaa
ggattaaaacataaaccacaaatcatcgttggcacaccaggtcgcacaattgatcatatc
aaccggaaattaatccgcctgggacatgtcaaatactttgttttagacgaagctgatgaa
atgttaaaaatgggattcatcgaagacatcgaaaccatcttagaagcaaccaacaaagac
aaacagatggtcatgttttccgctaccatggccaaaccaatcattcgtattacgaaacgc
tatatgaacaaccccaaactcatcagtgtcatcacggatgaagaaacaaacaaagatatt
acacagtattactatcaagtacaggacaaaaacaaagtcgaagccatcggtcgcttatta
cacgtatacaatcccaaacttaccttaatcttttgtaataccaaacgcaaagtcgatacg
gtaactcgggaactcaccaaaaaaggatacaacgtcgacaaaatccatggcgacctccaa
caaacggcacgcctacatgtccttgataaattccataccggtgtattagatttacttgtc
gcaaccgatgttgcagcaaggggattagatatcaagaacgttgaagctgttatcaactac
gatgttcctgaaaaagcggagttttacgttcatcgaatcggtcgtacgggccgcattggc
aataaaggatactcctttaccctcgtatcccgcaaggatcttggaaacctagaggaaatc
tttacctttaccaaatcaacaatcaagaaacgaaacatccccacaccggaaaaagtcatc
tcggttcgccaacaaaaacaagccgaagaagtgcatgacatcatcaccaatatcaatacc
aatccgcattttgatctagctagccaattgctgaatgaaaatgatgccaccgatgttgtc
caagcactgttacataaactaagtaagaacgattcatccaataaggttaatggcgacatt
aacgaatcatttcaaaaaggacataagaataaatcatcggataaaggacaaatgacacga
tatcatttgaatgttgggaaagttcaaggggtaaccccaaaatcactatcacaactcatc
atgaagaaaaccaaactacacaattcccaaatcgatcaaatttacgtcacaagaacatcc
gcgttcttttcgacaaaatcgtcaaagatgaatcaagtcatgaaaaatctatccaacata
accgttggcgggaaacgtacctcaatccgccttgcaaaagaacaacaataa
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