Candidatus Xianfuyuplasma coldseepsis: G4Z02_06420
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Entry
G4Z02_06420 CDS
T08386
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xcl
Candidatus Xianfuyuplasma coldseepsis
Brite
KEGG Orthology (KO) [BR:
xcl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xcl03032
]
G4Z02_06420 (topA)
03400 DNA repair and recombination proteins [BR:
xcl03400
]
G4Z02_06420 (topA)
Enzymes [BR:
xcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
G4Z02_06420 (topA)
DNA replication proteins [BR:
xcl03032
]
Prokaryotic type
DNA Topoisomerases
G4Z02_06420 (topA)
DNA repair and recombination proteins [BR:
xcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
G4Z02_06420 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_GRF
Cas12f1-like_TNB
HVO_2753_ZBP
Zn_Ribbon_TF
Auto_anti-p27
Zn_ribbon_PaaD
Toprim_4
DUF3268
Motif
Other DBs
NCBI-ProteinID:
QMS85402
UniProt:
A0A7L7KSZ8
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All DBs
Position
1343670..1345736
Genome browser
AA seq
688 aa
AA seq
DB search
MSQKLVIVESPSKSKTIEQYLGPDYTVLSSKGHIRDLAIRGQGGLGLDIDNDFQPQYEVI
KEKKKVVADLKKAVHKTDEVFLATDPDREGEAISWHLFQTLDIGDRPTHRVIFNEITRDR
VLEAFEHPRDIDYNLVSSQETRRILDRIIGFKLSKLLQNKIKSKSAGRVQSATLKIIVDK
EKEIQAFVPEEYWKVQAQFELFNAELAKFNNTKVELSSEQETNELVATLDDNYLVATVEQ
RERKRETKLPFTTSSLQQEASNKLNFSSRKTMLIAQRLYEGIDLANETVGLITYMRTDSI
RLSETFSYPAIKFIEEEYGKAYKGYIRKAKKSLNVQDAHEAIRPTSVFHRPKDVKQYLSR
DEYNLYKLIYNRTLASLMKAAKIQVTDVLLTNQQAEFKASAQEVVFDGYLKVYTYDTVQT
SQLPELTEGDVLTALNVETTQNFTSPPARYSEARLIKEMEDLGIGRPSTYSQTISTLKNR
KYVSVKEKRFIPTEQGMLTIEKLDQFFSQIVSADYTARMEKVLDDISEGEEHQTRIVTQF
YNSFIPMVENANKNMEKIAPKYTGEDCPKCGHKMVFRQSKYGTFEACSNFPACKYIKTKE
KEARIEPKTTGITCPKCGTGEIVERVAKKGRNAGKTFYACNNFPKCRNMLFGKPTGEACP
ECGRLLIENDKGEVVCSNSKECGFVVSK
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagaaacttgtaatcgtcgaatcccccagtaaatcgaaaaccattgagcagtat
cttggacccgattatacggtattatcctccaaaggacatatccgtgatttggccatccgt
ggccaaggtggactgggattggatattgacaatgacttccaaccacagtatgaagtcatc
aaagaaaagaaaaaagtagtcgctgatttgaaaaaagccgttcataaaacggatgaagta
tttttagcgaccgaccccgaccgtgaaggagaagccattagttggcatctgtttcagacg
ctggatatcggtgatcgcccgacccatcgtgttattttcaatgaaatcacacgagatcgg
gtgttagaagcatttgaacatccacgagatattgattataatctcgtctcttcgcaagaa
accagacgaattttagaccggattatcggatttaaattatcgaagttattgcagaataaa
attaaaagtaaatctgcaggacgtgtgcaaagcgcaaccttaaaaattattgtcgataag
gaaaaagaaatccaagcgtttgttcccgaagaatattggaaagttcaagcacaatttgaa
ctttttaatgcggaattagctaaattcaacaataccaaagtggaattgtcctctgaacaa
gagaccaatgaactcgtcgcaacattggatgataactatcttgttgctactgttgaacaa
cgcgaacgtaaacgtgaaactaaacttccatttacgacgtcgtcgctacaacaagaagca
tccaataaactaaattttagttctcgtaaaacgatgttgattgcccaacgattatacgaa
ggaatcgacttggctaacgagacggttggtttgataacctatatgcgtaccgacagtatt
cgtctgtcggaaacttttagttatcctgcaatcaagttcattgaagaggaatatggaaaa
gcatacaaaggatatattcgtaaagccaagaaatctctgaatgttcaagatgcacatgag
gcgattcgtccaacaagtgtattccatcgtccaaaagatgtcaaacaatacttgtcccgt
gatgagtataacctctataagttgatatataatcgaacgttagcgtctttaatgaaggca
gccaaaattcaagtaaccgatgtcttgcttaccaatcaacaagcagagttcaaagcatcg
gcacaagaagttgtgtttgatgggtacttgaaagtatatacctacgataccgtgcaaaca
tcgcaattaccggaacttactgaaggagatgtgttaacggcattaaacgtcgagaccacc
caaaacttcacatcaccaccggcaagatacagtgaagcacggctcattaaagaaatggaa
gatctcgggatcggtcgtccatcgacctattcccaaacgatctcgacattgaagaatcgg
aaatacgtgtccgtcaaagaaaagcgattcattccgacggaacaaggaatgttaacgatt
gaaaaactggaccaattcttcagccaaatagtgagtgcagactataccgctcggatggaa
aaagtcctcgatgatatctctgaaggcgaagaacaccaaacacggatcgtcacccaattc
tacaattcctttatcccgatggtcgaaaatgccaataaaaacatggaaaaaatcgcaccc
aaatataccggtgaagattgtcccaaatgtggccataaaatggtgtttcgccaatccaag
tatggaacctttgaagcatgcagtaatttccctgcttgtaaatacattaagaccaaagaa
aaagaagcgcgtatagaacccaaaaccaccgggattacctgtcctaaatgtggaaccggg
gaaatcgttgaacgtgtcgccaaaaaaggacgcaatgccggtaagacgttctatgcatgt
aataatttcccgaaatgtcgcaatatgctatttgggaagccaactggtgaagcctgtcct
gaatgtggccgactactcattgaaaatgacaaaggtgaagtcgtttgttccaactccaaa
gagtgtggatttgttgtctcaaaatag
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