Candidatus Xianfuyuplasma coldseepsis: G4Z02_09140
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Entry
G4Z02_09140 CDS
T08386
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
xcl
Candidatus Xianfuyuplasma coldseepsis
Brite
KEGG Orthology (KO) [BR:
xcl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G4Z02_09140 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcl03021
]
G4Z02_09140 (rpoD)
Transcription machinery [BR:
xcl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G4Z02_09140 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
KORA
Motif
Other DBs
NCBI-ProteinID:
QMS85905
UniProt:
A0A7L7KTG5
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All DBs
Position
complement(1867938..1869182)
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AA seq
414 aa
AA seq
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MDKEKIIQELVDISKVKGYLAVKEILKYVSDDSEEFDEIVAELERKQVDVVSEDEMVTYK
LPVEDDDDDDDYEEELDASIVLDLDFTKDIEEELLHDKSFENQISIKVDDPVRMYLKEIG
RVDLLEGSEEVDLATDIANAVVAKEQFDDMVANGEEISPEYKLQVEQIMFKGELAKNKLV
EANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVGKFDHTKGFKFSTYATWWIRQAIT
RAIADQARTIRIPVHMVETINKLVRTQRQLIQELKREPHPEEVAERMGISVEKVQIIQKV
AQEPISLESPVGEEEDSSLGDFIADPDTLTPMEYTSKEMLKRELDTVLETLTDREEKVLR
MRFGLLDGRSRTLEEVGREFGVTRERIRQIEAKALRKLRHPSRSKKLKDFMNGK
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggataaagagaaaataatacaagaactagtggacattagtaaagtgaaaggatacctt
gctgtaaaggaaatcctaaaatacgtcagtgatgatagtgaagagtttgatgagattgtt
gctgaattagaacgcaaacaagttgatgtcgttagtgaagatgagatggtaacgtacaaa
ttacctgtggaagacgacgatgatgacgatgattacgaagaggaattagatgcaagtatc
gtgttggatttggatttcacaaaagacattgaagaagaacttttacacgacaaatcattt
gaaaatcagatatccatcaaggttgatgatcccgttcggatgtatttgaaagaaattggt
cgcgttgatttgctagaaggatccgaagaagttgatttagcaaccgacattgccaatgcc
gttgtcgccaaagagcagtttgatgatatggtggcaaacggtgaagaaatcagtccggaa
tataagcttcaagtagagcaaatcatgtttaaaggtgaactggcgaaaaacaaactcgtt
gaagcaaacttacgtctcgtggtatccattgcgaaacggtatgttggtcgaggaatgcaa
ttcttggacttgattcaagaaggaaacatgggactaatgaaagctgttggtaagtttgac
cacaccaagggatttaagttttcaacctatgccacatggtggattcgtcaagcgataaca
cgtgcgattgcagaccaagcgcggacgattcgaatccccgttcatatggtggaaaccatc
aataaattggttcgaacacaacggcaattaatccaggaactgaaacgtgaacctcaccct
gaagaagttgcagaacggatgggtattagtgtagaaaaagtacaaatcattcaaaaagtt
gctcaagaacctatctcgctagagagtcctgttggtgaggaagaagactccagtttggga
gattttattgctgatcctgacaccctaactccaatggagtatacgtctaaagagatgcta
aaacgagaacttgacaccgttttagaaacactcacagatcgtgaagaaaaagtgttgcgg
atgcggtttggattactagatggacgcagtcgcacattggaagaagttggtcgagaattt
ggtgttacccgtgaacggattcgacagattgaggccaaagcacttcgcaaattacgacac
ccatcaagaagcaaaaaactaaaagacttcatgaacggaaaataa
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