Xanthomonas citri pv. citri MN12: J164_00408
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Entry
J164_00408 CDS
T03735
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
xcm
Xanthomonas citri pv. citri MN12
Brite
KEGG Orthology (KO) [BR:
xcm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcm03019
]
J164_00408
Enzymes [BR:
xcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J164_00408
Messenger RNA biogenesis [BR:
xcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J164_00408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJY93734
UniProt:
A0A0U5FNQ5
LinkDB
All DBs
Position
complement(348800..351301)
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AA seq
833 aa
AA seq
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MTDPAFPISPLLPRMRDSLAAHPRLVLEAPPGAGKTTQVPLALLDAPWLAGRKIVMLEPR
RVAARSAAQFMARQLGEPVGETVGYRIRFENKTSARTRIEVVTEGILTRLIQDDPMLESV
GVLLFDEFHERHLAGDLGLALALDVQAQVRDDLRIVAMSATLDGERLAGFLEAPRLSSAG
RSFPVEIAHFPARRDEALEPQTRRAVEHALSTHPGDVLVFLPGQREIARVHGALQDVLDP
AVQVLALHGELSVEAQSQVLQPGPQGRRRVVLATNVAESSVTLPGVRVVIDSGLAREPHY
DPNSGFSRLDVAAIAQASADQRAGRAGRVASGWAYRLWPQSQRLEPQRRAEITQVELTGL
ALELAAWGSSALRFVDAPPSGALAAAHELLQRLGALTASGGITALGRRMLALGTHPRLAA
MLAQAGEATRVALACDLAALLEARDPLRQGGDGLAARWRALAAFRQGRSAADANRGGLAA
IDSAARQWRRRLRCDSVPPSSVEAHALGDLLSHAFPDRIAARHPADPLRYLLANGRSARL
FDHSDLRGEPWLVASELRYEAKDALLLRAAPVDEAYLRRSLPERFVQQDVVQWDADKRAL
VARRQSSFDRIVLDSRPAGRVDPAHAAGALTDAVRQLGLDALPWTENLQQWRARVQSLRR
WMPELALPDLSDAALLETLDTWLRPAFAGKTRLDALDEASLGEALKSALPWERRQSIDRH
APTRISVPSGMERPISYALDHAGQPLPPVLAVKLQELFGLAETPRIADGRIPLTLHLLSP
GGRPLQVTQDLKSFWATTYPDVKKEMKGRYPRHPWPDDPWTAAATHRAKPRGT
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccccgcttttccgatctccccgttattgccgcggatgcgcgacagtctcgcc
gcgcatccgcggctggtgctggaagcgccgcccggcgccggcaagaccacccaggtgccg
ttggcgctgctggacgcgccgtggctggccggccgcaagatcgtgatgctggagccgcgc
cgcgtggcggcccgcagcgcggcgcagttcatggcgcgccagctgggcgagccggttggc
gagacggtgggatatcgcatccgcttcgagaacaagacctccgcgcgcacccgcatcgaa
gtcgtcaccgaaggcatcctgacccggctgatccaggacgacccgatgctggaaagcgtc
ggcgtgctgctgttcgacgaattccacgagcgtcatctggccggcgacctgggtctggcg
ctggcgctggatgtgcaggcgcaagtgcgcgatgacctgcgcatcgtggcgatgtcggcc
acgctggatggcgaacgcctggccggctttctggaagcgccgcggctgagcagcgccggt
cgcagtttcccggtggagatcgcgcactttccggcgcgccgcgacgaagcgctggagccg
cagacgcgccgcgcggtggagcacgcgttgtctacacatcccggcgatgtgttggtgttt
ttgcccggccaacgcgagatcgcgcgggtgcatggcgcactgcaagatgtactggatccg
gcggtgcaagtgctggcgctgcatggcgagctgtcggtggaggcgcaaagccaggtactg
cagcccggcccgcaaggccgccgccgtgtggtgttggccaccaacgtagccgagtcgtcg
gtcaccttgcctggcgtacgcgtggtgatcgacagcggtctggcgcgcgagccgcattac
gaccccaacagcggattttcgcggctggacgtagcggccattgcccaggcctcggccgac
cagcgcgccggccgcgccgggcgcgtcgccagcggctgggcctaccggctgtggccgcaa
tcgcaacggctggagccgcagcgccgcgccgaaatcacgcaagtggaactgacaggcctg
gcactggaactggccgcctggggcagcagcgcgctgcgctttgtcgatgcgccgcccagt
ggcgcgctggccgccgcgcacgagctgctgcagcggctgggcgcgctcaccgcaagcggc
ggcatcaccgcactcggccggcgcatgctcgcgctgggcacgcatccacgcctggcggcg
atgctggcgcaggccggcgaggcgacgcgtgtcgcgctggcctgcgacctggccgcgctg
ctggaagcacgcgatcccctgcgccagggtggcgatgggctggccgcgcgttggcgggcg
ctcgcggcatttcgtcagggccgcagcgcggccgacgccaatcgcggtggcctggctgcc
atcgacagcgccgccagacaatggcgccgccggctgcgctgcgacagcgtcccgccgtcc
agcgtcgaagcgcacgcactcggcgacctgctatcgcatgcgttccccgatcgcatcgcc
gcacgccaccccgccgacccgctgcgctacctgctcgccaacggccgcagcgcgcgcctg
ttcgaccatagcgatctgcgcggcgaaccgtggctggtggccagcgagctgcgctacgaa
gccaaggatgcgctgttgctgcgcgccgcgccggtggacgaagcctacctgcgtcgcagc
ctgcccgagcgcttcgtgcagcaggacgtggtgcagtgggacgccgacaagcgcgcgctg
gtcgcccgccgccaatccagcttcgaccgtatcgtgctcgacagccgcccggccggccgc
gtcgatccggcgcatgccgcaggcgcgctcaccgacgcagtgcgtcaactcggcctggac
gccctgccgtggacagagaacctgcagcagtggcgcgcacgcgtgcagtcgttgcggaga
tggatgcccgagctggcgctgcccgatctctccgatgcagcgctactggagacgctggac
acctggctacgcccggccttcgccggcaagacccgactggacgcgctggatgaagccagc
ctgggcgaagcgctgaagagcgcgctgccctgggagcgccgccagtcgatcgaccgccat
gcgcccacccgcatcagcgtgccctccggcatggagcgaccgatcagctacgccctcgac
cacgccggccaaccgctaccgccggtgctggcggtcaagctgcaggagctgttcggccta
gccgaaaccccacgcatcgccgacggccgtatcccgttgaccttgcacctgctgtccccc
ggcggacggccgctgcaggtgacccaggacttgaagagtttctgggcgactacgtatccg
gacgtaaaaaaagagatgaaggggcggtatccgaggcatccgtggccagacgacccttgg
accgctgcagccacccacagagcaaaaccacgtggcacctga
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