Xanthomonas citri pv. citri MN12: J164_01089
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Entry
J164_01089 CDS
T03735
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
xcm
Xanthomonas citri pv. citri MN12
Pathway
xcm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xcm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J164_01089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xcm03021
]
J164_01089
03400 DNA repair and recombination proteins [BR:
xcm03400
]
J164_01089
Enzymes [BR:
xcm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J164_01089
Transcription machinery [BR:
xcm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J164_01089
DNA repair and recombination proteins [BR:
xcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J164_01089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AJY94404
UniProt:
A0A0U5FB02
LinkDB
All DBs
Position
1125872..1130086
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM
GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR
VVELHAKVKVRITQVDVEAGGKRSSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKKN
ISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTTEGLIMTPIVEGGDVVEPLRERVL
GRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARCY
GRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FNNLKSVAHASGSLVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQSVAN
WDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAQAKELRPIVR
IVDAKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFE
GEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPAKYDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRRKASGLTDSEM
ETLSGKPAVAEPVAAVADAGADEE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaatcagcagcgccagacgctggatttcgatgcgatc
aagatcgcgctggcgtcgccggacctgatccgttcgtggtcctacggcgaagtgaagaag
cccgaaaccatcaactaccggaccttcaagcccgagcgtgatggcctgttctgcgccgcc
atcttcggaccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggtaccgaagtcaccctggccaaggtgcgccgcgag
cgcatgggtcacatcgacctggcctcgccggttgcgcacatctggttcctcaagtcgctg
ccgtcgcgcattggcttgatgctggacatgaccctgcgtgacatcgagcgcgtgctgtac
ttcgaagcctatgtcgtcaccgagccgggcctgaccccgctcgagcgccgccagctgctg
accgaagagcagtatctgaccgcgcgtcaggagtacaacgacgacttcgacgccgccatg
ggcgccgaggctgtgtatgagctgctgcgcacgatcgacctgcaatcggaaatgactcgt
ctgcgcgaggaaatcgccagcaccggttcggaaaccaagctcaagcgtttgaccaagcgc
atcaagctgatcgaagccttcctggaatcgggtaaccgtccggagtggatggtcatgacc
gtgctgccggtgctgccgccggatctgcgtccgctggtgccgctggatggcggccgcttc
gcgacctcggatctgaatgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgt
cgcctgctggagctcaatgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggtcgatgcgctgctggacaacggccgtcgcggtcgtgccatcaccggcaccaac
aagcgtccgctgaagtcgctggccgacatgatcaagggcaagcagggccggttccgtcag
aacctgctcggcaagcgcgtggactattccggccgttcggtcatcaccgtcggtccgtac
ctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgtggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaagaagccgaagtctgggacatcctggaagaagtgattcgcgagcatccg
gtgctgttgaaccgcgcgccgaccctgcaccgcctgggcatccaggcgttcgagccggtg
ttgatcgaaggcaaggccatccagctgcatccgctggtctgtactgccttcaacgccgac
ttcgacggcgaccagatggctgtccacgttccgctctcgctggaagcccagctggaagcg
cgtgcgttgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggtctgtactacatgagccgcgccctggagaacaag
aagggcgaaggcatggtgttcgccaacaccagcgaagtgaagcgcgcctacgacaaccgc
gtggtcgaactgcacgccaaggtcaaggtacgcatcacccaggtggacgtggaagccggc
ggcaagcgcagtagcggcacctcgatcgtggacaccacggtcggtcgtgcgctgctgagc
gagatcctgcccgagggcctgccgttccagctggccaacaccgagatgaccaagaagaac
atctcgcgcctgatcaactccagctaccgtctgctgggcttgaaggacaccgtcgtgttc
gccgacaagctgatgtacaccggctacgcctacgcaacccgcgccggcgtgtcgatcggt
atcgacgacatgctgatccccgacgagaagaagggcatcctcaccgaggccgaagccgaa
gtgctggaaatccaggagcagtaccagtcgggtctggtcaccgccggcgagcgctacaac
aaggtcgtggacatctggtcgcggactagcgagcgcatcgccaaggcgatgatggacacc
atcggtaccgaaaaggtcgagaacgccaagggcgagaccatcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcccgtggtagccaggcgcagatccgtcagctg
gccggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatcaag
gcgaacttccgcgaaggcttgaacgtgcaggagtacttcaactccacccacggcgcccgt
aagggtctggccgataccgcgctgaagacggcgaactccggttacctgacccgccgcctg
gtcgacgtggcgcaggacgtggtgatcaccgaaatcgattgcggcaccaccgaggggttg
atcatgaccccgatcgtggaaggcggcgacgtggtcgagccgttgcgcgagcgcgtgctg
ggccgcgtggtggccgaggacgtgtacctgccgggcaacgacgaagagccgatcgtcacc
cgcaacacgctgctcgacgaagcctgggtggccaagctcgaagacgccagtgtgcagtcg
gtgaaggtgcgttcgaccatcagctgcgaatcctcgttcggcgtgtgcgcacgctgctac
ggccgcgatctcgcacgtggtcaccaggtcaacatcggcgaagcggtcggcgtcatcgcc
gcgcagtcgatcggtgagccgggcacccagctgaccatgcgtacgttccacatcggtggt
gcggcgtcgcgtgcggctgcggtggacaacatcaccgtcaagaccaccggttcggtgaag
ttcaacaacctcaagtcggtggcgcatgccagcggttcgctggttgcggtctcgcgttct
ggcgaactgtccgtgctcgatggccatggccgcgagcgcgagcgttacaaactgccgtac
ggcgcgaccatcactgccaaagacggcgatgcggtcaaggctgggcagagcgttgccaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggtttcattcgcttcatcgac
ttcgtcgacggcgtcaccgtcatcgagaagaccgacgagctgaccggtctggcgtcgcgc
gaaatcaccgacccgaagcgtcgcggtgcacaggccaaggaactgcgtccgatcgtgcgc
atcgtcgatgccaagggtaacgacctgacgattcccaatacggatctaccggcccagtac
ctgctgccgccgcgctccattgtcaacctgcaggacggcgctgccgtcggtgtgggcgac
gtggttgccaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgttgccgacttgttcgaagcacgcaagccgaaggatccggcgatcctggcagaacgc
tcgggcatcatcagcttcggtaaggacaccaagggcaagcagcgcctgatcatcaaggat
accgatggttcggaacacgaagagctgattcccaagtaccgccagatcatcgtgttcgaa
ggcgaacacgtgaccaagggcgagaccgtggtggacggcgagccgagcccgcaggacatc
ctgcgtctgctgggtgtcgaaccgctggccgcttatctggtcaaggaaatccaggacgtg
tatcgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcactcgccagatg
ctgcgtaaggtcgagatcgttgatcagggcaacagcaagttcctcaacggcgagcaggtc
gagcggcagcgcgtcatcgaggaaaatgcccgcctggtcaagcgcaacgaactgccggcc
aagtacgatcccgtgttgctgggtatcaccaaggcatcgctggccaccgagtcgttcatc
tcggcggcatcgttccaggagaccacccgcgtgttgaccgaggcagccgtgcgcggcacc
cgcgacaacctgcgcggtctgaaggaaaacgtgatcgtgggtcgcctgatcccagccggt
acgggtctggcgtaccacgccggacgtcgcaaggcctcgggtctgaccgactcggaaatg
gaaacgctgtcgggcaagccggcagtcgccgaaccggtcgccgcagtggccgacgctggc
gcggacgaggagtaa
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integrated database retrieval system
