Xanthomonas citri pv. citri MN12: J164_03980
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Entry
J164_03980 CDS
T03735
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xcm
Xanthomonas citri pv. citri MN12
Pathway
xcm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J164_03980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcm03019
]
J164_03980
Enzymes [BR:
xcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J164_03980
Messenger RNA biogenesis [BR:
xcm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J164_03980
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJY97239
UniProt:
A0A0U5BXX5
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All DBs
Position
complement(4478985..4480748)
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AA seq
587 aa
AA seq
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MQAAPGLPRAPHEDGIMSDKPLTDVTFSSFDLHPALIAGLESAGFTRCTPIQALTLPVAL
PGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDA
VKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICV
LDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET
ESITAARVRQRIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRV
GVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHR
IGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVTSELLTPLPRAPRVPVEGE
EADDDAGDSVGTIFREAREQRAAEEQRRGGGRGGPGGSRSGSGGGRRDGAGADGKPRPRR
KPRVEGQAPAAAASTEHPVVAAVAAQAPSAGVADAERAPRKRRRRRNGRPVEGAEPALAS
TPVPAPAAPRKPTQVVAKPVRAAAKPSGSPSLLSRIGRRLRSLVSGN
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccgcgcccgggctgcccagggcgcctcacgaagacggaataatgagcgacaaa
ccgctgaccgatgtgaccttttcctcgttcgacctgcatccggccttgatcgccgggctg
gagagcgccgggtttacccgctgtaccccgatccaggcgctgaccttgccggtcgcgctg
ccgggcggcgatgtcgccggccaggcccagaccggtaccggcaagaccttggcatttctg
gtcgcggtgatgaatcggctgctgatccgcccggccctggccgaccgcaagccggaagac
ccgcgcgcgctgatccttgcgccgacccgcgagctggcgatccagatccacaaggatgcg
gtcaagttcggcgccgacctgggcctgcgctttgcgctggtctacggcggggtggactac
gacaagcagcgcgagctgttgcagcagggcgtggacgtgatcatcgccaccccgggccgc
ctgatcgactacgtcaagcagcacaaggtggtctcgctgcacgcctgcgagatctgcgtg
ctggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatccgcttcctgctg
cggcgcatgcccgagcgcggcacccggcagacgttgttgttctcggccaccctcagccac
cgcgtgctggagctggcctacgagcacatgaacgagccggagaagctcgttgtcgaaacc
gaaagcatcaccgccgcgcgggtgcgccagcgcatctatttcccgtccgacgaagagaag
cagacgctactgttgggcttgctgtcgcgcagcgaaggcgcgcgcaccatggtgttcgtc
aacaccaaggccttcgtggagcgcgtggcgcgcaccctggagcggcatggctaccgggtg
ggtgtgctgtcgggcgatgtgccgcagaagaagcgcgagtcgctgctcaaccgcttccag
aaaggccagctcgaaatcctggtcgccaccgacgtggccgcgcgcggtctgcatatcgac
ggcgtcaagtacgtctacaactacgacctgccgttcgacgccgaagactacgtccatcgc
atcggccgcaccgcgcgtctgggcgaggaaggcgatgcgatcagcttcgcctgcgaacgc
tatgcgatgagcctgcccgacatcgaggcctacatcgagcagaagattccggtcgagccg
gtgacgtccgaactgctgacgccgctgccgcgcgcgccacgcgtgccggtggaaggcgaa
gaggccgacgacgacgctggcgacagtgtgggcacgatcttccgcgaagcgcgcgagcag
cgtgccgccgaagaacagcgtcgcggtggtgggcgcggtggccccggcgggtcgcgcagc
ggcagtggcggtggtcgccgcgatggcgcaggtgccgatggcaagccgcgtccgcgtcgc
aaaccacgggtggaaggccaagcgcctgcagctgcggcgtcgaccgaacatccggtggtt
gctgcagtagcggcacaggcaccttccgcgggcgtggccgatgccgagcgcgcaccacgc
aagcgtcggcgtcgtcgtaacggtcgtccggtcgagggtgccgagccggcactggcatcc
acgccggttcccgcgcctgccgcaccgcgcaagcccacccaggtggttgccaagccggtg
cgtgccgccgccaagccgtcgggtagcccgtcgctgctcagccggatcggccgccgactg
cgttcgctggtctccggcaactga
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