Xanthomonas citri pv. citri MN12: J164_04417
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Entry
J164_04417 CDS
T03735
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
xcm
Xanthomonas citri pv. citri MN12
Pathway
xcm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
J164_04417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xcm03400
]
J164_04417
Enzymes [BR:
xcm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
J164_04417
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
J164_04417
DNA repair and recombination proteins [BR:
xcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
J164_04417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AJY97667
UniProt:
A0A0U5FKU4
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All DBs
Position
complement(5013914..5014729)
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AA seq
271 aa
AA seq
DB search
MPELPEVETTLRGLSPHLVGQRIHGVILRRPDLRWPIPEQIERLLPGATITNVRRRAKYL
LIDTDAGGSVLLHLGMSGSLRVLPGDTLPRAHDHVDISLQSGRLLRFNDPRRFGCLLWQS
GTQAHDLLAALGPEPLSDAFTGDYLHALAQGRRAAVKTFLMDQAVVVGVGNIYAAESLHR
AGISPLREAGKVSLERYRRLADAVKDILAYAIQRGGTTLRDFISPDGAPGYFEQELFVYG
REGEACKQCGRVLKHATIGQRATVWCGSCQR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttgcccgaggtcgaaacgacgttgcgtggcctgtcgccgcatctggttggg
cagcggatccatggcgtgatcctgcgtcggcccgatctgcgttggccgattcccgagcag
atcgagcgcttgcttcccggcgccaccattaccaacgtgcgccgacgtgcgaaatacttg
ctgatcgatacggatgccggcggcagcgtgctgttgcatctggggatgtccggaagtctg
cgggtgctgcctggcgacacgttgccgcgggcgcacgaccatgtggatatcagtctgcaa
agcgggcgcttgctgcgtttcaacgatccgcgtcgctttggctgcctgttgtggcaatcc
ggcacacaagcccatgacttgctcgctgcgcttggtccagaaccattatcggatgcattt
actggcgattatctccacgcgctggcacaggggcggcgcgctgccgtcaagacctttttg
atggatcaggccgtggttgtcggagttggaaatatctacgctgccgaaagcctgcatcgg
gcgggaatcagtccgttgcgcgaggcggggaaggtctcgctggagcgttatcggcgtctg
gctgatgcagtgaaagacatcctggcgtatgccatccagcgcggtggaaccacattgcgc
gacttcatcagccccgatggtgcgcccggctatttcgagcaggaactttttgtttatggg
cgcgagggcgaggcctgcaaacagtgtggacgggtcttgaaacacgcgacgatcggtcaa
cgcgctacggtgtggtgcgggagctgtcagcgataa
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