Xanthomonas citri pv. citri NT17: J169_03793
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Entry
J169_03793 CDS
T03734
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xcn
Xanthomonas citri pv. citri NT17
Pathway
xcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J169_03793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcn03019
]
J169_03793
Enzymes [BR:
xcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J169_03793
Messenger RNA biogenesis [BR:
xcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J169_03793
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
P-loop_SecA
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
AJY92582
UniProt:
A0A8I0H6F9
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All DBs
Position
4282082..4283464
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AA seq
460 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLL
QHLGTAPQTVNGPRKPRALILTPTRELATQVHDSLRGYSKYLRIPSAVIYGGVGMGNQLD
ALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRMLDMGFLPSIKRILTKLPRQ
DRQTLLFSATFEENIKQLALEFMRNPVQIQVTPSNTVAESITHRVHPVDGARKRDLLLHL
LAQDSREQTLVFARTKHGSDKLALFLEKSGIKTAAIHGNKSQGQRMRALSDFKAGRVTVL
VATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGSTGEAISLVAQDEAKLLRQ
IVRMLGRDVEIRDVPGYEPQTPIRWGNSAPGRAEQPGGDRAPRKSHARRPHGDAPRQAHA
HAGPKKPGGQRSNGPRQANTGAGAGRRDGGRGGQRPSGTR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatccctgggccttgcgcccttcctgttgcgcgcgctggccgagcagggc
tacgaaacccccaccccgatccagcagcaggcgatcccgctggtcctggccggtcacgac
ctgctggccggcgcgcagaccggcaccggcaagaccgctgccttcggcctgccgctgttg
cagcacctgggcaccgcgccgcagaccgtcaacggcccgcgcaagccgcgcgcgctgatc
ctgacccccacccgcgaactggccacccaggtgcacgacagcctgcgcggctacagcaag
tacctgcgcatccccagcgcggtgatctatggcggcgtgggcatgggcaaccagctcgat
gcgctgcgtcgtggcgtggacctgctgatcgcctgcccgggccgcctgatcgaccatatc
gaacgtcgcagcgtggacctgtccggcatcgaagtgctgatcctggacgaagccgaccgc
atgctcgacatgggcttcttgccctccatcaagcgcatcctgactaagttgccgcgccag
gatcgtcaaacgctgctgttctcggcgaccttcgaagagaacatcaagcagctggcgctg
gagttcatgcgcaacccggtgcagatccaggtcaccccgagcaataccgtggccgagagc
atcacccaccgcgtgcacccggtcgacggcgcgcgcaagcgcgatctgctgctgcatctg
ctggcgcaggacagccgcgagcagaccctggtcttcgcccgtaccaagcacggcagcgac
aagctggcgctgttcctggagaagtccggcatcaagaccgcggcgatccacggcaacaaa
agccaggggcagcgcatgcgtgcgctgagcgacttcaaggccggccgcgtgaccgtgctg
gtggccaccgatatcgccgcgcgcgggatcgatatcgatcaactgccgaaggtcatcaac
tacgatctgccgatggtggccgaggactacgtgcaccgcatcggccgcaccggccgtaat
ggctcaaccggcgaggcgatttcgctggtggcgcaggacgaagccaagctgctgcgccag
atcgtgcgcatgctgggccgcgatgtggaaatccgcgacgtgccgggctacgagccgcag
accccgatccgctggggcaacagcgcgccgggtcgtgccgagcagccgggtggcgatcgc
gcgccgcgcaagagccatgcccgtcgtccgcacggcgatgcaccacgtcaggcgcacgcg
catgccggcccgaagaagccgggtggccagcgcagcaacgggccgcgtcaggccaacact
ggcgcgggtgcaggccggcgcgatggtggtcgtggtggtcagcgtccgagcggtacgcgc
tga
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