Xiphophorus couchianus (Monterrey platyfish): 114133380
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Entry
114133380 CDS
T05908
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114133380 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xco03041
]
114133380 (prpf8)
Spliceosome [BR:
xco03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
114133380 (prpf8)
Complex C
U5 SnRNP specific factors
114133380 (prpf8)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
114133380
NCBI-ProteinID:
XP_027855024
LinkDB
All DBs
Position
18:complement(19570321..19586479)
Genome browser
AA seq
2358 aa
AA seq
DB search
MAAAFPYRGVPPGMPTGVPPGVPPVVPPGVPPGVPPVVPPPAPIPDYMSEEKLQEKARKW
QQLQAKRYAEKRKFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPH
AVLKLLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRD
RRHFKRMRFPPFDDEEPPLDYADNILDVEPLEAIQMELDTEEDSSVVEWFYEHQPLKDNP
KFVNGTTYRRWQFTLPMMSTLYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGP
KFEPLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNV
VFIKTEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDN
TANGIALLWAPRPFNLRSGRTRRAIDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLN
ALKHRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLH
LDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADG
LQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLVYYRFNTGPVGKGPGCGFWSAGWRVW
LFFMRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMM
PEGIKQNKARTILQHLSESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYN
RERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWL
ESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEA
LSRIKRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFP
PWIKPADTEPPPLLVYKWCQGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLL
RLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHR
ASEMAGPPQMPNDFLSFQDTTTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEH
PDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSV
YSKDNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESM
QRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQT
RIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGM
SHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIP
RINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQA
LGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLW
WSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVF
DQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTT
QKYWIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGN
WFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQII
WFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLA
KWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACL
KVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPD
KTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEIS
APSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRA
ISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNP
QVKEIRCIVMVPQWGTHQTVHLPNQLPSHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHA
KIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYE
RVQMLLSDRFLGFFMVPGQVSWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNF
ASLQEGEIYNADREDMFG
NT seq
7077 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcctttccctacagaggagtccctccagggatgccaacaggtgtgcctcca
ggagtacctccggttgtccctcctggtgttccaccaggcgtaccccctgttgttccccct
ccagcgcctattccagattacatgtctgaggaaaaactccaggaaaaagcaaggaaatgg
cagcagctgcaggccaaacgttatgcggagaaaaggaagtttggctttgtggatgcccag
aaggaagacatgcctcctgagcacgtccgcaagatcataagggaccatggagacatgacc
aatagaaagtttcgccatgacaaaagagtctacctaggcgctttgaagtacatgcctcac
gcagtgctgaagcttctggaaaacatgccgatgccctgggagcagatcagagatgtccct
gtgctctaccacatcaccggagccatttcctttgtgaatgaaatcccttgggtcatagag
cctgtctacattgcccagtggggcaccatgtggatcatgatgcgtcgtgagaagcgtgac
cgacggcacttcaagaggatgcgctttccgccgtttgatgatgaagagccaccgctggac
tacgcagacaacatcctggatgtggaacctctggaggccattcagatggagctcgatact
gaggaagattcttcagtcgtggagtggttctatgagcaccagcccctcaaagataatccc
aagtttgtgaatggcaccacctaccgtcgctggcagttcacgctccccatgatgtcgaca
ctgtatcgcctggccaatcagcttctaacagatttagtggactttaattacttttatctg
tttgacctgaaggccttcttcacttcaaaagctttgaacatggccatcccaggaggacca
aagtttgagccacttgtcagagacattaatcttcaggatgaagactggaacgagttcaac
gacatcaacaaaatcatcatccggcagcccatcaggactgagtacaagattgctttcccc
tacttgtacaataacctgccgcaccatgtgcaccttacctggtaccacacacccaatgtg
gtatttatcaagactgaggacccagatcttccagcgttctactttgatccgttgatcaac
cccatttctcacagacattcggtcaagagtcaggagcctctccctgatgatgatgaggag
tttgagcttccagagtttgtggagccgttccttaaagagacgccgctctacactgacaac
acagccaatggcatcgctctcctttgggcccccagacctttcaacctgcgttctggccgc
acaaggcgcgccatcgatatccccctggtcaaaaactggtaccgagagcattgccctgca
ggacaaccggtgaaagtacgtgtgtcgtaccagaaactgctgaagtactacgtactcaac
gctctcaaacaccgaccccccaaggctcagaagaagaggtacctgttccgctcctttaag
gcaacaaagttcttccagtccaccaagctggactgggtggaggtggggctgcaggtctgc
aggcagggttacaacatgctcaatctgctcattcatcgcaagaacctcaactatctgcat
ctggactacaacttcaacctgaagccggtcaagacgctcaccacaaaggagagaaagaag
tccaggtttggcaacgccttccatctgtgcagagaggtgctacgtctgagcaagctggtg
gtggacagccatgtgcagtacagactgggaaatgttgatgcctttcagctggctgacggt
ctgcagtacatctttgcacacgtgggacagctgacgggcatgtaccgctacaagtacaag
ctgatgagacaaatccgcatgtgcaaagacctgaagcatctcgtctactaccgctttaac
actggtcctgtgggcaaagggccaggctgtggcttctggtctgctggctggagagtgtgg
ctcttcttcatgcgggggatcactccgctgctggagaggtggctcgggaacctgctggcc
aggcagttcgaaggacgtcattccaagggcgtggccaagactgtgaccaaacagcgcgtg
gagtcgcactttgacctggagctgcgtgctgcagtgatgcacgacatcctggatatgatg
cctgaaggcatcaaacagaacaaggccagaaccatcctgcagcacctcagtgagtcctgg
aggtgctggaaggccaacatcccatggaaggtgcctggtctcccgactcccattgagaac
atgatcctgcgatacgtgaaggccaaagccgactggtggaccaacacagctcactacaac
agagagcgaattcgccgcggagccactgtggacaaaacggtgtgcaagaagaacctgggc
cggctgacccgtctgtacctgaaggctgagcaagagagacagcacaactatctgaaggac
ggaccttacatcactgcagaagaggctgtggccatttacacaaccactgtgcactggctg
gagagtcggcgcttctctcccatacctttccccccactttcctacaagcacgacaccaag
ctgctgatcctggctctggagaggctcaaagaggcatacagtgtgaaatctcgtctgaat
cagagtcagagggaggagctggggctgatagagcaggcctacgacaacccgcatgaggcg
ctttccaggatcaaacgtcacctgctcacacagagagctttcaaagaggttggtatcgag
ttcatggacttgtacagccacctcgtgcctgtgtatgatgtggagcccttggagaagatc
acagatgcttacctggaccagtacctttggtatgaggcagacaagaggcgacttttccct
ccctggatcaaaccagctgacactgaacctccaccgcttctggtctacaagtggtgccaa
ggcatcaacaacttgcaggacgtgtgggaaacagctgagggcgagtgcaacgtgatgctg
gagtctcgctacgagaaaatgtacgagaagatcgatctgactttgctcaacaggctgctg
cgtcttatcgttgaccacaacattgctgattacatgacggccaagaacaacgtggtgata
aactacaaggacatgaaccacaccaactcttacggcatcatcaggggactccagtttgcc
tcgttcattgttcagtactatggtcttgtgatggacctgctggtgctcggtttgcaccgt
gccagcgagatggccggcccaccccagatgcccaacgacttcctgagtttccaggacacc
accaccgaatcagcccatcccatcaggctgtactgtcgttacatcgaccgcattcacatc
ttcttcagattttctgctgatgaggccagagacctgattcagcggtacctgacggagcac
ccggaccccaacaacgagaacatcgtgggatacaacaacaagaagtgctggcctcgtgat
gcccgcatgagactgatgaagcacgacgttaacctcgggcgagcagtcttctgggacatc
aagaaccgcctgccgaggtctgtgaccacagtccagtgggagaacagctttgtgtcggtc
tacagcaaagacaaccccaacctgttattcaacatgtgtggcttcgagtgccgcatcctt
ccaaagtgccgcaccagctatgaagagttcactcacaaagatggcgtctggaacctgcag
aatgaggtcactaaagagaggacggcccagtgtttcctgcgtgtggatgatgaatccatg
cagcgcttccacaacagagtgcgtcagattctcatggcttctggatccaccactttcacc
aagattgtgaacaaatggaacacggctctgatcggcctgatgacctacttccgtgaggct
gtggtcaacacacaggagctgctggaccttctagtgaaatgcgagaacaagatccagact
cgtatcaagatcgggctgaactctaaaatgcctagccgtttccctccagttgtcttctac
actcctaaagagctgggtggtcttggcatgttgtccatgggtcacgttctcatcccacag
tcagacctgcggtggtctaagcagacagatgtggggatcacccacttcaggtctggaatg
agtcatgaagaagatcagctcattcctaacttgtaccgctacattcagccatgggagagc
gagttcatcgactcccagagagtctgggctgagtacgccctcaagagacaggaggccatt
gcccaaaacaggcgtctcactctggaggatttggaggactcgtgggacagaggaatacct
cggatcaacacacttttccagaaggacagacacactctggcctatgacaaaggctggaga
gtcaggacagacttcaaacagtatcaggtgctgaagcagaatcccttctggtggacccac
cagaggcacgacggtaagctgtggaacctgaacaactaccgcacagacatgatccaggct
ctaggcggcgtggagggcatcctggagcacacactcttcaaaggcacttacttccccacc
tgggagggtctcttctgggaaaaggctagcggctttgaagagtcgatgaaatggaagaag
ctgacgaacgcccagaggtctggtctgaaccaaatcccgaatcgtcgcttcactctgtgg
tggtcccccaccatcaacagagccaacgtgtacgtgggtttccaagtacagcttgacttg
acaggaatctttatgcacggcaagatccccacgctgaagatctccctcattcagatcttc
agggctcacttgtggcagaagattcacgagagcatcgtcatggatctctgtcaggttttt
gaccaggagctcgatgctctggagatcgaaactgtgcagaaggagaccatccatcctagg
aagtcctacaagatgaactcgtcctgtgcagacatcctcctgtttgcgtcttacaagtgg
aacgtgtcccgcccgtctctgctcgctgactcaaaggatgtgatggacagcaccaccaca
cagaagtactggattgacattcagctcagatggggcgactacgactctcacgacattgag
cgctacgccagagccaagttcctggactacaccacagacaacatgagcatctacccctcc
cccactggagtgctcattgccattgacctggcttacaacctgcacagtgcctatggtaac
tggttccctggtagcaagcctctgatccagcaggccatggccaagatcatgaaggccaac
ccggctctgtatgtgctcagagagcgcatccgcaagggtctgcagctgtactcctcagag
cccactgaaccgtacctgtcctctcagaactatggagaactcttctccaaccagatcatc
tggtttgtggacgacacgaacgtgtacagagtcaccatccacaagacttttgaaggaaat
ttgaccacaaagcccatcaatggagccattttcatcttcaaccccaggacaggccaactg
ttcctcaagatcatccacacatctgtgtgggctggacagaaacgtctgggacagctggcc
aaatggaaaacagctgaagaagttgctgccctgatccgctctctccctgtggaggaacag
ccaaaacagatcattgtgaccaggaagggcatgttggaccctctggaggtccacttgctc
gacttccccaacatcgtgatcaagggctcagagttacagctgcccttccaggcttgtctg
aaggtggaaaagtttggagacctgatcctgaaggccacagagccacagatggtgctgttc
aacctctacgatgattggctgaagaccatctcgtcttacactgcgttctcccgtctcatc
ctgatcctaagagcgctccacgtcaacaacgaccgcgccaaggtgatcctgaaacctgat
aaaaccacaatcactgagccccatcacatctggcccacgctcacggatgaggagtggatc
aaggtggaagttcaacttaaagatctcattctggccgattatggcaaaaagaacaacgtg
aacgtcgcctccctgactcagtctgagatccgtgacatcatcctgggtatggagatctca
gccccgtctcagcagcgtcagcagatcgccgagatcgaaaaacagaccaaagagcagtcg
cagctcaccgccacacagacccgcaccgtcaacaaacatggagatgagatcatcacatcc
accacctctaactacgagacgcagaccttctcttccaagactgagtggagagtcagggcc
atatctgctgccaacctccatctccgaaccaaccacatctatgtgtcctctgatgacatc
aaggagacaggttacacctacatcctgcccaagaacgttctcaagaaattcatttgcatt
tcagatctgcgggctcagattgcaggctatctgtatggcaccagcccaccagacaacccc
caggtgaaggagatccgttgtatcgtcatggtacctcagtgggggacacaccagactgtc
cacctccccaaccagctgccgtctcatgaatatcttaaagaaatggagcctcttggctgg
atccacacacagccgaacgagtccccacagctgtccccacaggacgttacaacccacgct
aagatcatggctgataacccgtcatgggatggagaaaagaccatcataatcacttgcagc
ttcacgcctggttcgtgcacactcacagcctacaagctgacccccagcggctatgagtgg
ggtcgccagaacaccgataaaggcaacaacccgaaaggttaccttccatcccactatgaa
agagtccaaatgctgctctctgatcgcttcctgggctttttcatggttcccggccaagtc
tcctggaactacaacttcatgggtgtgcgccacgatcccaacatgaagtacgacctgcag
ttgtccaaccccaaagagttctaccatgaagttcatcggccttcgcacttcctaaacttc
gcctcgctgcaggagggcgagatttacaacgctgacagagaggacatgttcggctga
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integrated database retrieval system
