Xiphophorus couchianus (Monterrey platyfish): 114133385
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Entry
114133385 CDS
T05908
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
114133385 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114133385 (scarf1)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xco04990
]
114133385 (scarf1)
Membrane trafficking [BR:
xco04131
]
Endocytosis
Phagocytosis
Scavenger receptors
114133385 (scarf1)
Domain-containing proteins not elsewhere classified [BR:
xco04990
]
Laminin domain-containing proteins
Laminin EGF-like domain-containing proteins
114133385 (scarf1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_EGF
EGF_2
Prominin
Motif
Other DBs
NCBI-GeneID:
114133385
NCBI-ProteinID:
XP_027855054
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Position
18:complement(19551943..19559639)
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AA seq
897 aa
AA seq
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MRFLRALSALLCCSLSSAQTLDPGGKNVCKDSRDSPSPVCCTGWRQQGKECTIPVCEGEQ
ACLENEVCIFPGVCRCPPGFYGAQCKTECPLAFWAPDCRQVCPCYPHGRCNPVTGECTCY
PTRWGSLCQNTCKCTVNGHCHRVNGKCICNKGWWSQMCSKPCQCSSGGSVDSSCDPLTGR
CQCHGGHWGMKCHATCNCNQSPCNERTGVCECEAGSWGPSCDRNCNCDLSHSSCDPASGE
CLCHPGYMGASCSRPCEAGYYGSSCTMRCGSCKDKRPCSSTDGACAACEPGLNGTRCDQP
CATGFYGEGCNDKCPRCWNNEPCEPKTGKCWRCDPGWTGTRCEEPCSDGTYGDACRFLCS
PCFHGNCHHVTGRCVCQPGFQGESCNNTCPAPLFGLNCSSLCDCGEGVGCHPVTGACPYS
GRGAVLAGVLVPLFLLFFAVLCCCLCCGGGPADSKNSAAVADGGMLVRMKYHVYSVLANI
GAALPCMSDWSSGLPRVTVSHHDPEVTFNHSFIEPPSSGWVTEGSSFDSDEEEGEALYCV
PPREDIPAVAGGEFQEMSSKCNMFLDPSGFSSEDIASSFNIPRTSSNAKSKRPSVSFAEG
TRFSPKERRGSGQDPGAPPRNKVKTPWGVLMLSALQSQGGTARTGEEDRAEEEEREDGDE
GQATETQESSCEVVEQEVDTSPNLQVPGTSGQRRTMSNTAAHKGTPLLNSEGEAGALHKV
TTVYVTVGKAGRPVTKAESSSEGPVQAMLRRLGSLQRQKEQDGGRAKSKAAEGITKPPRR
KLGARAAVWEQGGPSGGEAKPVRRKNASSGASEAPPSEGNTPNRPLSSILKSVPEVAISG
SGLRAEGRAMQGVDAAAGQTECSYLTVGPTGETTQAINNQGAANDEPCYENVLISQQ
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgaggtttctcagagctctgagcgctttgctctgctgctcgctgtcctctgcacagaca
ctggatcctggtgggaaaaatgtctgcaaagattcaagggactcccccagtccggtctgt
tgcactggatggcgtcagcagggaaaagagtgcaccatacctgtctgtgaaggtgaacag
gcgtgtcttgagaatgaagtctgtatatttcctggagtgtgtcgctgcccacctggcttc
tatggagctcagtgtaaaacagagtgtccactggcgttttgggccccagactgccgacag
gtgtgtccgtgctaccctcatggccgctgtaatcctgtcaccggcgagtgtacgtgctac
cccacccgctggggttccctttgccagaacacctgcaagtgcactgtcaacggccactgc
caccgtgtcaatggaaaatgcatctgcaacaaaggctggtggtcccagatgtgctccaaa
ccgtgccagtgctccagcggtggctccgtggattccagctgcgacccactaacaggccgc
tgccagtgccacgggggccactggggcatgaaatgccacgccacgtgcaactgtaaccag
tctccgtgtaacgagcggaccggagtgtgtgaatgcgaggcaggctcctgggggcccagc
tgtgacaggaactgtaactgtgacctctcacacagcagctgtgacccggcctctggggag
tgcctctgccacccagggtacatgggtgcttcatgcagccgtccttgtgaagctgggtac
tatggcagcagctgtacaatgagatgtggttcctgtaaagacaagcggccgtgctcgtcc
accgatggtgcctgcgctgcctgtgaacccggcctgaatggcacacgatgtgaccagcca
tgcgctactggtttctatggagaaggctgcaacgataagtgtccgcggtgctggaacaat
gaaccctgtgaaccaaaaaccgggaaatgttggagatgtgaccctggatggaccggaacc
aggtgtgaggagccctgctcagatgggacgtatggggacgcctgccgcttcctgtgcagt
ccctgtttccatggtaactgtcatcatgtgacaggaagatgtgtctgtcagccaggtttt
caaggagaaagctgtaacaacacctgtcccgctccgctgtttggcctcaactgttcgtcc
ctctgtgactgtggtgaaggagtcggctgccaccccgtcactggtgcttgcccctacagt
ggtagaggtgctgtgctcgcaggcgtgctggttcccttgttcctgctgttttttgctgta
ctgtgttgctgcttgtgttgcggaggaggtccagctgacagcaaaaacagtgcggctgtg
gctgatggcggcatgttggtcaggatgaaatatcacgtctacagcgtcctggcgaacatc
ggcgctgccctcccctgtatgtcggactggtcttccggcctgcctcgagtcactgtgtct
caccacgacccagaggtgactttcaaccacagcttcatcgagcctccctcttctggctgg
gtcaccgaggggtcgtccttcgacagtgacgaagaggagggcgaggctctctactgcgtt
cctccaagagaagacatcccggccgtggcgggtggggagttccaggagatgagctccaag
tgcaatatgttcctggacccgtccgggttcagcagcgaggacatcgcttcgtccttcaac
atccctcgcacctccagcaacgccaagtccaagaggccgtccgtgtcatttgcagaaggg
acgcgctttagtcctaaggagaggcgtgggtccggtcaggaccctggtgctcctccgcgt
aacaaagtgaagaccccctggggggttctgatgctgtccgccctccaaagtcagggaggg
acagctagaactggggaggaagacagagctgaggaagaggagagggaagatggggatgag
ggtcaagcaacagagacacaagagtcgagctgtgaggtggtggaacaggaagtagacaca
agcccaaatttacaagtccctgggacgtcagggcaaaggcggaccatgtccaacacagct
gcgcataaaggaaccccactgctcaactctgagggtgaggcgggggctcttcataaggtt
accacggtgtatgtgacagtcggtaaggccggcaggcctgtgacaaaagcagagtcgagc
tctgaaggaccggtccaggccatgctgcgcagactcggcagcctgcagagacaaaaggag
caggacggcggaagagccaagtcaaaggcagccgaggggatcaccaaacccccgaggagg
aagctgggagctcgggctgccgtgtgggagcagggagggccgtcaggaggtgaggctaag
ccagtcaggcggaagaacgcctccagcggcgcttcagaggctcctccatcagaggggaac
acgccaaatcggcccctgtcatccatcctgaagagcgtcccagaggtggccatcagcggg
tcaggtctgagagctgaaggaagagccatgcagggtgtggatgcagctgcagggcaaaca
gagtgcagctatctgaccgtgggaccaacaggagagacgactcaggccatcaacaaccag
ggagcagcaaacgatgaaccctgctatgaaaacgtcttaatctcacaacaataa
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