Xiphophorus couchianus (Monterrey platyfish): 114133435
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Entry
114133435 CDS
T05908
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440
Homologous recombination
xco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114133435 (brip1)
03460 Fanconi anemia pathway
114133435 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xco03400
]
114133435 (brip1)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114133435 (brip1)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
114133435 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
114133435 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Motif
Other DBs
NCBI-GeneID:
114133435
NCBI-ProteinID:
XP_027855138
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Position
18:complement(30907249..30950449)
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AA seq
1188 aa
AA seq
DB search
MASPVEYTIGGVKVHFPCKAYPSQLAMMNSIMRGLNYGQHCLLESPTGSGKSLALLCSAL
GWQQAQMAKVKEGGGHPGDRSQSDKDVGDCKKSEPPSPCPCVCHREAAQSVVVDLTESPC
KETAQPSHTASEDVPLPGESQAKSPSLASRLSEKVQASLDPDCNKDEDFRPDRKRIRTAE
YKSHKRQRTQQGVIFIDDEPDLESETSGPQSWKTASTHQAAGLSSSCSSSEPCSRCPCAS
VKDNLKNKDKDKDGSKKIPKIFFGTRTHKQITQIAHELKRTVYSGVHMTILSSRDHTCVN
PDVAPHFNRNERCKDLLEAKDGRSCRFYHGVQKMRDQHTLQWVHGLREAWDIEDLVSLGK
RLRSCSYYAARELMQDASIIFCPYNYLLDPMIRESMEIDLEGQILVLDEAHNIEDCARES
ASYTLELSSLQTTKDELDGMVHSNIRRSKHESLRNFCYALINWIQESQVLLSERGFESAC
KVWSGKDILTVFHSLGVTFDTFCNMKQNLASVLEKEERVGLVNGKEDMVQVPIISASTAT
VLKNLFMVLDFLYRDSCRFAEDYRIALQRSYAWTNQVPPDVPDAQGFLVRPRHRNRQNAR
VKTEVLTLSFWCLNPAVAFSDLSGSVHSIVLTSGTLSPMGSFSSELGVKFTIQLEANHVI
NKSQVWVGTVGAGPQGRKLCATFQHAETFAFQDEVGDLLLHVCRVMVKGVLCFLPSYKML
DKLKDRWVNTGLWEKLEQEKTVITEPRGGGKGDFDELLQMYYDAIKTCEGRDGALLIAVC
RGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHCKSRGLLPGHRWYEIQA
YRALNQALGRCIRHRNDWGALILVDDRYKNNPNKYIAGLSKWVRQLVQQHNTFSNAMQSL
KAFSEVQQNVEVAPVNNPTLNVSDLSNSSPLSVSAQSFNGEPEPRRTNSCDKPPYSQQNT
VTQLKTEHSNTAEPLKALRSAPAKQLSAQHLYHIFTINPTNTNLKTPIFKAKPANCSVRP
GALQISSPPMNLETLRTNQTDGNCLSENTEAPGVSTITTPPRFKSESPVPAKSSDDDEDK
SVFYTPELFEDEGNPPKENHVSSPRVDPGTERSATPSQDLATAFGEQSVVSVSKQSTELS
QGQKEDTEALQQSGKTEENESQSRQRGSRLHRLSRSRQRVSLSQTGNQ
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcctgtggagtacaccatcgggggagtgaaggttcacttcccctgcaaggcg
tatccatcccagctagccatgatgaattctatcatgcgaggattgaactacggacagcac
tgtttgttggagagccccacgggcagcggtaaaagtctggccttgctctgctctgccctg
ggctggcagcaggctcagatggctaaagtgaaagaaggaggaggtcatcctggagacaga
agccagtcagataaagatgtgggcgactgcaagaagtcagaacctcccagcccgtgtccc
tgtgtgtgccacagagaagcagcccagtctgttgtggtggacctcactgagtcaccctgc
aaagagacggcccagccatcgcacacagcatcagaagacgtgccactaccaggtgagtct
caagctaaaagcccgtctttagcatcccgtctgtcggagaaagtccaggcctctctagac
cccgactgcaataaagatgaggacttcagaccagacaggaagcgcatccgtactgcagag
tacaagagccataaaaggcagcgcacacaacaaggcgtcatattcattgatgatgaacct
gatttggagagtgaaacatctggtcctcagagctggaaaactgcctcaacccaccaggca
gccggtttgtcctcatcatgcagttcctccgaaccctgctcccgctgcccgtgtgcatca
gtcaaagacaacttgaagaacaaggacaaagacaaagatggcagcaagaagattccaaag
attttttttggcacacgaacccataagcagataactcagattgctcatgagctgaagcgc
accgtttattccggagtgcacatgactatcctttccagcagagatcacacctgtgtcaac
ccagacgtggcgccacatttcaaccgcaacgaacgctgcaaggatctgctggaggccaaa
gatggaaggtcatgcaggttctaccatggtgtgcagaagatgcgggaccagcacaccctg
cagtgggtccatgggctgcgtgaagcctgggacattgaagacctggtgtctctggggaaa
aggctccgatcctgctcttactatgctgctcgggaacttatgcaggatgcctctatcatc
ttttgtccgtataactacttgctggatccaatgatcagagagagtatggaaattgacctg
gaggggcagatcttggtgctggatgaggcccataacatagaagactgtgcaagggaaagc
gccagctacaccttagagctcagcagcctgcagacgaccaaagatgaactggacggcatg
gtccacagtaacattagacgctccaagcacgagtctctcaggaacttctgctacgccctg
atcaactggattcaagagagccaggtgctgctgtctgaacgaggatttgagagtgcctgc
aaagtctggagtggaaaggatatactgaccgttttccacagcttgggtgtcacatttgac
accttctgtaatatgaagcaaaacctggcatctgtgttggagaaggaggagcgtgttggt
ttggttaacggcaaggaggacatggtgcaggtcccaattatcagcgcatctacagcaact
gtcctgaaaaacctcttcatggtgttggattttctctacagggacagctgccggtttgct
gaggactaccgcattgcattgcagaggagctatgcctggaccaatcaggtcccgcctgac
gttcctgatgcccagggctttttggtccggcctcgccaccgaaaccgtcaaaatgcacgg
gtcaaaacggaagttctcacgctgagtttctggtgtctcaaccctgctgtggctttctct
gacctgagtgggtcagtgcacagtattgtgctgacatcaggaacactgtcccctatgggc
tccttctcctctgaacttggggtaaaattcaccatccagttggaagccaaccatgtgatc
aacaaatcccaggtgtgggtgggcactgttggtgcaggaccccaaggccgaaaactctgc
gccacctttcagcacgctgaaacatttgccttccaggatgaggtgggggatttgctgctt
catgtctgccgggtcatggtcaaaggcgtgctctgctttctgccttcctacaagatgctg
gacaagctgaaagaccgttgggtcaacactggtctgtgggagaagctggaacaagagaaa
accgtcatcacagagccccgcggtggtgggaagggggactttgacgagctacttcagatg
tactacgatgccataaaaacttgtgaaggtagagatggtgcactacttattgctgtatgc
aggggtaaggtcagtgaaggcctagacttcacagatgacaatgccagagcagtagtgacc
attggaattccttttccaaacatcaaagacctccaggtggaactaaagatgaagtacaat
gaccagcactgcaagtcaagaggtctccttccaggccatcgctggtatgagatccaggcc
tacagagctctaaaccaggcgctggggagatgcatccggcacagaaatgactggggtgcc
ctgattctggtggatgaccgatacaagaacaatcctaataaatacattgcaggtttgtct
aaatgggtccgccagcttgtccagcaacacaacaccttcagcaatgctatgcagtctctg
aaagctttctctgaggtgcagcagaatgtggaggtggcccctgtgaacaacccgacgctc
aacgtttctgatttgtctaacagtagtcccttgtctgtgtcggctcagagttttaatgga
gaaccagagcctcggagaaccaattcatgtgacaaacccccttattcccagcagaacaca
gtcacacagctgaaaactgaacacagtaacacagcagagccactgaaggcactgcgaagt
gctccagctaagcaactctcagcccagcatttgtatcacattttcaccatcaaccctaca
aacaccaaccttaagacgccgatctttaaagcgaaaccagcgaactgctccgtccggcct
ggggccctgcagatctcttctccaccaatgaatctggaaaccttgcgcactaaccaaacg
gatggaaactgtctcagtgaaaacactgaggctccgggggtgtccacaataaccacccct
ccccgctttaaaagtgaatcaccagtaccagcaaagtcttctgatgatgacgaagacaag
agtgttttctatactccggaactttttgaggatgaaggaaacccaccgaaagagaaccat
gtgtcctctcccagagttgatcctggcacagagagatcagccactccatctcaggattta
gccactgcatttggtgaacagagtgttgtttcagtcagtaagcaaagcacagagctatca
cagggccagaaagaggacacagaggcactgcagcaaagtgggaaaacagaggagaatgag
agccagagtagacagagaggaagtagacttcacaggctgtccaggtccagacagagagtt
tccctcagtcagacaggtaaccagtag
DBGET
integrated database retrieval system
