Xiphophorus couchianus (Monterrey platyfish): 114133454
Help
Entry
114133454 CDS
T05908
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03030
DNA replication
xco03420
Nucleotide excision repair
xco03430
Mismatch repair
xco03440
Homologous recombination
xco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114133454 (rpa1)
03420 Nucleotide excision repair
114133454 (rpa1)
03430 Mismatch repair
114133454 (rpa1)
03440 Homologous recombination
114133454 (rpa1)
03460 Fanconi anemia pathway
114133454 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114133454 (rpa1)
03032 DNA replication proteins [BR:
xco03032
]
114133454 (rpa1)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114133454 (rpa1)
Transcription factors [BR:
xco03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
114133454 (rpa1)
DNA replication proteins [BR:
xco03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
114133454 (rpa1)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
114133454 (rpa1)
MMR (mismatch excision repair)
114133454 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
114133454 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
CATSPERD-E_C
RADX
Motif
Other DBs
NCBI-GeneID:
114133454
NCBI-ProteinID:
XP_027855168
LinkDB
All DBs
Position
18:complement(27094252..27118672)
Genome browser
AA seq
600 aa
AA seq
DB search
MASLSTGAIEALANGSGWSEAVLQLLNIRKIDGGSGPSRFRVMMSDGRHTLSSFMLSTQL
NYMAEENLLVPNCVCVLKRQVTNVLKDGRRVVIILEIDVIKPADASDKIGDPIPYSDGQS
KGPQPAPVPESRPPLQPQNRNEGVDTNLKRNFAKKIPSALPDTPGGSSKIVPIASLNPYQ
SKWTIRGRVTNKSSVRTWSNARGEGKLFSMEIVDESGEIRVTCFNQEVDKFFSLIEVGKV
YYVSKGSLKIANKQYTSVKNDYEMTLNGESTVIPCEDSCDVPMMQCDFVSIGDLENREKD
AIVDVIGVCKSVDELTRLTTKANREVSKRALSLMDMSGKLVTVTLWGEEAEKFDGSGQPI
VAIKAAKLSDFGGRSLSASFSSTMMINPDIPEAYKLRGWFDKEGHAMEGQSLTEVRGAGR
SLLENWKSLADVKSEHLGHGDKADYYSCIATIVFLRKENCLYQACPSQDCNKKVVDQQNG
MFRCEKCDKEFPNFKYRLILSANIADHADNQWVTCFQDSAEAILGQNAAYLGQLKDSNES
AFDEIFQQANFNTFIFRNRVKLETYNDESRIKATVMEVKPVDHRDYSKRLIMNIRSMGAK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtctttcaacgggcgcgatagaggctttagcaaatggcagcggttggagcgaa
gcagtgcttcagttgctgaacattcgcaagatcgatggcgggagtgggccctctcgcttc
agggtgatgatgagcgacggacgacacacactgtcatccttcatgctctccactcagcta
aactacatggccgaggaaaaccttctggtcccaaactgcgtgtgcgtcctgaagcggcag
gtcacaaatgtgctcaaagatggacgacgagtggtaatcattttagaaattgacgtcatc
aaacctgctgacgcctctgataaaataggagacccaattccttactctgatggccagagc
aaaggcccgcagccagctccagtccctgagagcagaccgcctctacagccacaaaacaga
aatgaaggtgtagacacaaatttgaagagaaactttgcaaagaagattccttctgctttg
cctgatactccaggaggaagctccaaaattgtccccatcgccagcctcaacccctaccag
tccaagtggacaatccggggtcgtgtgaccaacaagagctccgttcgtacgtggagcaac
gctcgaggcgaaggaaaactcttctctatggagatcgtagatgaaagtggggagatccgt
gtgacctgcttcaaccaagaagtcgacaagttcttctctctcatcgaggtcggcaaggtc
tactacgtctccaagggctctctgaagatcgcaaacaagcagtacacgtcggtgaagaac
gactacgaaatgactctcaacggagagtccaccgtcattccctgtgaggacagctgcgac
gttcccatgatgcagtgcgactttgtctccatcggcgacttggagaacagagagaaagac
gctatcgttgatgtaattggagtgtgcaagagcgtggatgagctgacccgcctgacgacc
aaggccaaccgcgaagtgtccaagagggcgctgagtttgatggacatgtccgggaagttg
gtgaccgtcaccctgtggggagaggaagcggagaagttcgacggctccggacagccgatc
gtagccataaaggccgccaagctctcggacttcggaggccgctcgctttccgcgtccttc
agcagcaccatgatgatcaacccagacatcccagaggcatacaagctcagaggctggttt
gacaaggaaggacacgccatggagggtcagtccctgacggaagtgagaggtgccggcaga
agtctcttggagaactggaagtccttggctgacgtgaagtcggagcatctgggacacggt
gacaaggctgactactactcctgcatagccaccatcgtgtttctgcgtaaggagaactgc
ctttatcaggcctgcccaagccaggactgcaacaaaaaagtggtggaccagcagaatggc
atgttccgctgcgagaagtgcgataaagagtttcccaacttcaagtaccgcctcattctg
tccgccaacattgcggaccacgccgacaaccagtgggtgacttgcttccaggacagcgct
gaggccatcctgggccagaacgctgcttacttgggccagctgaaggactcgaacgaatca
gcgttcgacgagatcttccagcaagcgaacttcaatacttttatctttcgcaacagagtg
aagctggaaacgtataacgacgagtcgaggattaaagcgacagtgatggaggtgaagcct
gtcgaccacagagactacagcaagaggttgatcatgaacatacggagtatgggagccaag
tag
DBGET
integrated database retrieval system
