Xiphophorus couchianus (Monterrey platyfish): 114133490
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Entry
114133490 CDS
T05908
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03022
Basal transcription factors
xco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114133490 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
114133490 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114133490 (ercc2)
03036 Chromosome and associated proteins [BR:
xco03036
]
114133490 (ercc2)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114133490 (ercc2)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114133490 (ercc2)
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
114133490 (ercc2)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
114133490 (ercc2)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
114133490 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
114133490
NCBI-ProteinID:
XP_027855260
LinkDB
All DBs
Position
18:complement(3775068..3790912)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
RAFPLDVTKLIYCSRTVPEIEKVVEELRKLMEFYAKETGEVNNFLALSLSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYIRAQRHSNPNQPVCRFYEEFDAVGRQVPLPAGIYNLDDL
KDFGRRKGWCPYYLARYAILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRMLDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE
TDIYLANPVLPDEVLQEAVPGSIRTAEHFVGFLRRFLEYLKARLRVQHVVQESAPQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPRILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAVVPDGIVAFFT
SYVYMENIVASWYEQGILENIQKNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARSDKRGKLPRWIQEHINDGSLNLTVDEAVQLSKHF
LRQMAQPFRQEDQLGLSLLTLEQLQSEEMLQKISQMAHQT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaacatcgagggtctgctggtctattttccgtatgattacatctatccggag
cagtactcttacatgctggagcttaagaggactttggatgcaaaaggtcatggagtcctg
gagatgccgtcaggaacagggaagaccatctctctgctgtctctcatcgtcgcctaccag
agggcgtttccgctggacgtgaccaagttgatttattgctccagaacagttcctgaaatt
gagaaagttgtggaggaactcaggaagctgatggagttttatgccaaagaaacgggagaa
gtgaacaacttcctggctctgtctctgtcctccaggaagaacctctgcatccacccagag
gtcagctctctgcgttttgggaaggaggtggacgggaagtgccacagtctgacggcgtcc
tacatccgcgctcaacgccacagcaatcccaaccagcctgtctgtcgcttctatgaggaa
tttgacgcggttggacgacaggttcctcttcctgccggcatctacaacctggacgacctg
aaggactttggcaggaggaaaggctggtgtccgtactatctggctcgctacgcgattctt
catgccaacatcgttgtgtacagctaccactacctgctggacccaaagatagctgacctg
gtgtccaaggagctggccaagaagtcggtggtggtttttgatgaggcccataacatcgac
aacgtgtgcatcgactccatgagtgtgaatataactcgacgaatgctggaccgctgccag
aacaacgtagacacgctgcaaaacacgatacacaagataaaggagacggatgctgccaag
ctgagggaggagtacagacgattggtggaggggctgaaggaagccaacgttgccagggaa
acggacatctacctggcaaacccagtgctacctgacgaggtcctgcaagaggccgttccc
ggttcgatccgtacggccgaacactttgtcggcttcctgcggcgtttcctggagtacctg
aaggcccgcctgcgggtgcagcacgtcgtccaggagagcgccccgcagttcttaaaagac
atcttcgacaaagtctgcattgacagaaaacctctcaggttctgtgcggagaggctgcag
tcgttgctgcgaactctggagatcgcagacatcgcagatttttcggccgttacgctcatc
tccaactttgcaactcttgtcagcacctacagccaaggttttaccatcatcatcgaacct
tttgaggacagaactccaaccatcgccaaccctgtgctgcattttagctgcatggacccg
tctatagccatcaaacctgtttttcagaggttccagtcggtcatcatcacctcagggact
ctctctccgttggacatctacccccgcatcctcgactttcgacccgttaccatggcgtcc
ttcactatgacgcttgcacgaacctgcctctgtcctctgattgtcggccgagggaatgac
caggtggctctgagctcaaagttcgagacgagagaggatttcgccgtgatccgtaactat
ggcaacctcctcctggagatgtcggcggttgttccagacgggatcgttgcttttttcacc
agctacgtctacatggagaacatcgtggcgtcttggtacgaacaggggatcctggagaac
atccagaaaaacaagctgatcttcatcgaaacgcaggacgcggcggaaaccagcatggct
ctggaaaagtaccaggaggcgtgtgagaacggccgaggagccatcctcctctctgtggcc
cgagggaaggtttctgaaggaatagacttcgttcaccattttggcagagcggttatcatg
tttggagtcccgtatgtttacactcagagccgcatcctgaaggctcggctggagtatctg
cgggatcagtttcagatcagagagaacgacttcctgacgttcgacgccatgcgtcacgcc
gctcagtgcgtcggcagagccatcagaggcaagacggactacggcctcatgatctttgct
gacaagagatacgctcgatcagacaaacgtgggaaacttcctcgctggattcaggagcac
atcaacgacggcagcctgaacctcaccgtggacgaagccgtccagctgtccaagcacttc
ctgcgtcagatggctcagccgttcagacaggaggaccagctgggtctgtctctgctgact
ctggagcagctgcagtcggaggaaatgctgcagaaaatctctcagatggctcatcagacc
tga
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