Xiphophorus couchianus (Monterrey platyfish): 114133501
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Entry
114133501 CDS
T05908
Name
(RefSeq) hypoxia-inducible factor 3-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04137
Mitophagy - animal
xco04140
Autophagy - animal
xco04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
114133501
04137 Mitophagy - animal
114133501
04148 Efferocytosis
114133501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114133501
Transcription factors [BR:
xco03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
114133501
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GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
114133501
NCBI-ProteinID:
XP_027855276
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Position
18:complement(4000117..4019221)
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AA seq
650 aa
AA seq
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MEKEDGVVAVKRSSSEQRKLRSRDAARCRRSQETEVFYELARTLPLPRRVCTHLDKAGIM
RVTLSFLRMQQLLQPEESVKKEEEDEDPMDAFFPQALAGFVMVMTEEGDMVFLTENVNKH
IGITQLELLGQSVYDFIHPCDQEELRDLLTPRPGLSKKLMAEQPSERNFFLRMKSTLTSR
GRTVNIKSATWKVLHCTGHIRPFGSASPPAARVMTLLCEPIPHPSSVEFPLDSCTFLTRH
TMDLRFTHCEGRVTELVGYKPEDLIGRSAYEFYHALDSDRIKKSLLTLLSKGQANSSPYR
FLANCGGFVWAETQATVLYSKTSQPEAIVCLNFILSAVEQPDVVFSVEQTRCSLLPKTEP
SSLERAAEDSGISDTCDSDGEDAGSSAKLLLKLAEKPEELLQLPDGGDGVAPALTAGRVE
LSFASPPSPDVVPDHPKDLCSPQLRQLLSPIFDGLNPSSSPAASSEPDLSPCEEEVMDTS
EVERFFTICPEETQLKEQAIEDVEGKELEMYAPYISMDDDFQLTFLSNLPQEANKPASLL
FQGADGIPAVTVSRKRTHDLDKEPPPLLMIQDKRHKPDPSSIEEELLLSNRLLGSLEDGD
QPDLILDSGRSQLLTDRDPVLSELCDTAALMRDIFVPRPADLSPPLSPMT
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggaagacggggtcgtggcggttaaacggagcagctcggagcagaggaagctc
cgctctcgcgatgcggcccgctgccgacgcagccaggagaccgaggtgttctatgaactg
gcccggactctgccgctgccgcgccgagtctgcacccacctggacaaggccggcatcatg
agggtgacgctcagcttcctgcggatgcagcagctcctgcaacccgaagagagtgtgaag
aaagaggaggaggatgaagatccgatggacgctttctttccccaggccttggcgggcttc
gtcatggtgatgaccgaggagggggacatggtgttcctgacggaaaacgtcaacaagcac
atcggcatcacgcagctggagctgctcggccagagcgtctacgacttcattcatccctgc
gatcaggaggagctgcgagacctcctgactccgcgtccaggtctgagtaagaagctgatg
gctgagcaaccgagcgagagaaacttcttcctgcgaatgaagagcaccctgaccagcagg
gggcgcaccgtcaacatcaaatctgccacctggaaggttctccactgcacgggccacatc
cgcccctttggctcagcgtcgccccctgctgccagagtgatgacgctgctgtgcgagccg
atcccccacccgtccagcgtggagttccctctggacagctgcaccttcctcacccgccac
accatggacctgcgcttcacccactgcgagggcagggtaacggagctggtgggctacaaa
ccggaggacctgattggacgctcggcctacgagttttatcacgcgctcgactcggatcgc
atcaagaagagcctgctaacacttctctccaaaggccaggcgaactcttccccctaccgc
ttcctggccaactgcggtggcttcgtgtgggccgagactcaagccaccgtcctctacagc
aagacgtcgcagcccgaagccatcgtctgcctcaacttcatcctcagtgcggtggagcag
ccggacgtggtgttctccgtcgagcagacccgctgcagcctcctgcctaaaaccgagccc
tcctccctggagcgcgccgccgaggacagcggcatctccgacacctgcgactcggacggc
gaggacgccggcagctcggcgaagctcctcctgaagctggcggagaaaccggaggagctt
ctgcagctgccggacggcggagacggcgtggcgccggcgctgacggcaggtcgggtggag
ctgtcgttcgccagtcctcccagtccagatgtggttccggaccatcctaaggacctgtgc
agccctcagctgcggcagctgctgtcgcccatcttcgacggcctgaatccgtcctcgtcc
ccagccgcctcctctgagccggacctgagcccctgtgaagaggaggtgatggacaccagc
gaggtggagcgcttcttcaccatctgcccggaggaaacgcagctcaaggaacaagccatc
gaggacgtggaggggaaggagctggagatgtacgcgccgtacatctccatggacgacgac
ttccagctcaccttcctcagcaatctgccgcaggaagccaacaaacccgcgtcgctgctg
ttccagggcgccgatgggattcctgccgtcaccgtcagcaggaagaggactcacgacttg
gacaaagagccgccgcctctgctgatgatccaggacaagagacacaagccggacccgtcc
tccatagaggaggagctgctgctcagcaacaggctgctgggttcgctggaagacggcgac
cagccggatctgattctggactccggacgcagtcagctactcacagacagagacccggtt
ctgtcagaactgtgcgacaccgcagctctgatgagggacatcttcgtccctcgcccggct
gatctgtcgccgccgctctcgcccatgacctga
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