Xiphophorus couchianus (Monterrey platyfish): 114133646
Help
Entry
114133646 CDS
T05908
Symbol
hnf1b
Name
(RefSeq) hepatocyte nuclear factor 1-beta isoform X1
KO
K08034
transcription factor 2, hepatocyte nuclear factor 1-beta
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114133646 (hnf1b)
Transcription factors [BR:
xco03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
114133646 (hnf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1B_C
HNF-1_N
Homeodomain
Homeobox_KN
APP1_cat
HTH_5
Motif
Other DBs
NCBI-GeneID:
114133646
NCBI-ProteinID:
XP_027855497
LinkDB
All DBs
Position
18:27572079..27599212
Genome browser
AA seq
565 aa
AA seq
DB search
MFSKMVSKLTSLQQELLSALLDSGVTKDVLIQALDDMDPSPPPQGFGVKMESLPVSPGKL
NGADADSKPVFHTLTNGHGKGKLSGDEGSEDGDDYDTPPILKELQSLNTEEAAEQRAEVD
RMLAEDPWRAARMIKGYMQQHNIPQREVVDITGLNQSHLSQHLNKGTPMKTQKRAALYTW
YVRKQREILRQFNQATQASIGSMSDKGSQDPAFFYPEFNMSGPGMGQSSEEVGTEPLSKK
MRRNRFKWGPASQQILYQAYERQKNPSKEEREALVEECNRAECLQRGVSPSKAQGLGSNL
VTEVRVYNWFANRRKEEAFRQKLAMDAITAPPHGINPLLSHSSPHHPQTSVSPPMRYSQG
PGEVSSSTAISHHSSSSQSVLQQVSPGGLDHSHSLLSPDAKMISGSGGGLPPVSTLTNIH
SSHHSHQQPQNLLMPLTGVMAIAQSLSTSQAQTVPVINSVAGSLAALQPVQFSQQLHSPH
QSSLMQQSPSHMSQQPFMATVTHSHMYSHKQEPPQYSHPSRFPSSMVTDANSISTLSSMS
SSKTDAPVNKMVQLGGISWCPLPAW
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgttctccaaaatggtctcgaagctgacgtccctacagcaggagctcctcagcgccctg
ctggactcaggcgtcaccaaagacgtcctgatccaggccctggacgacatggaccccagt
ccgccgccgcagggcttcggggtgaaaatggagagcctgcccgtgtcgcccggcaagctg
aacggcgccgacgcggactccaagcccgtcttccacacgctcaccaacggacacggcaag
ggcaagctgtccggggacgagggctccgaggacggggacgactacgacacgccgccgatc
ctcaaggagctccagtcgctcaacacggaggaggccgcggagcagcgggcagaggtggac
cgcatgttggccgaggacccatggcgggcggctcgtatgatcaaaggttacatgcagcag
cacaacatcccccagcgggaggtggtggacatcacggggctcaaccagtctcacctctcc
cagcacctcaacaaagggacgcccatgaagacgcagaagcgagcggccctctacacctgg
tacgtcaggaagcagcgggaaattcttcgacagttcaaccaggccactcaagcttctatt
ggcagcatgtcagacaaaggcagccaggatccggcctttttctacccggagttcaacatg
tccggcccgggaatgggtcagtcgagcgaagaggttggcactgagccgctgagtaagaaa
atgaggcgtaaccgtttcaaatgggggcctgcatctcagcaaatcctgtaccaggcttac
gagcggcagaagaaccccagcaaggaggagagggaggctctggtggaggagtgcaacaga
gccgagtgtcttcagagaggcgtctccccttccaaagctcagggactcggctctaacctg
gtcaccgaagtgagagtttataactggtttgccaacagacgtaaggaggaggccttcagg
caaaagctggctatggacgccatcactgcaccgccgcacggtatcaacccactgctgtca
cacagctcgccgcatcatccccagaccagcgtgtcccctccaatgcgttacagccaaggc
cccggcgaagtctcctcctccaccgccatcagtcaccacagcagcagcagccagtcggtg
ctgcagcaggtgtccccgggaggactggaccacagccacagcctgctgtcgcccgacgcc
aagatgatttcaggctcgggcggaggacttcctccggtcagcacgctgaccaacatccac
agttcccaccacagccaccagcagccgcagaacctcctaatgcctctgacaggagtcatg
gcgatagcacagagtttgagcacgtcgcaggcccagacggtgccggtgatcaacagcgtg
gctgggagcctcgccgctctccagccagtgcagttctcccagcagctccacagcccccac
cagtcgagcctgatgcagcagtcgcccagccacatgagccagcagcccttcatggccacc
gtcacacactctcacatgtattcgcacaaacaagagcccccgcagtactctcacccgtcc
cgtttcccctcatccatggtcacagacgccaacagcatcagcaccctcagctccatgtcc
tccagcaagacggacgctcctgtaaacaagatggtgcaactcgggggtatctcctggtgt
cctcttccggcttggtga
DBGET
integrated database retrieval system
