Xiphophorus couchianus (Monterrey platyfish): 114133816
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Entry
114133816 CDS
T05908
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114133816 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114133816 (cpsf3)
03019 Messenger RNA biogenesis [BR:
xco03019
]
114133816 (cpsf3)
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114133816 (cpsf3)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114133816 (cpsf3)
U7-dependent histone pre-mRNA processing factors
114133816 (cpsf3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
114133816
NCBI-ProteinID:
XP_027855711
LinkDB
All DBs
Position
19:22603029..22620959
Genome browser
AA seq
690 aa
AA seq
DB search
MASKRKADMVVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEDSMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTVKQNQAIPFTGPYSLLVCHLRNL
TGDVEELDGTEKKTLKIFKSITLVHEVGMVVLEWVANPLNDMYADAITTVVLEVQSNPKA
QKVMETQSTTMDMDVFQTRLEVMLQDMFGEDCVDFSDGKVISVMVDGQTVHISLETRAVY
CEDDVSEDDSLREMVELAVQRLYDALNPAL
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaagcgaaaagcagacatggtggtccctgctgaggaaagcgaccagctcctc
atccgccctcttggcgcaggccaggaagttgggagatcttgtataatcctggagttcaaa
gggaggaaaattatgctggactgcggcatccatccgggtttagagggaatggatgctctt
ccctatatcgacctgatcgaccccgcagagatcgacctcctcctcatcagccattttcac
ttggatcactgcggcgctctgccctggttcctccagaaaaccagctttaaggggcggaca
ttcatgacgcacgccaccaaggccatctaccgctggctgctgtcagactacgtcaaagtc
agtaacatctctgcagatgacatgctgtacactgagaccgacctggaggacagcatggat
aaaatagagaccatcaacttccatgaggtgaaggaagtggctgggatcaagttctggtgc
taccatgctggtcatgtgctgggagcggccatgttcatgatcgaaatagctggagttaag
ctgctgtacacaggagacttctccagacaggaggacagacatctgatggcagccgagatc
ccgagtgtcaaacctgacatcttaattatagagtcgacctacgggactcacatccacgag
aagagggaggagcgcgaggctcgcttctgcaacacggtgcatgacatcgtcaaccgggag
ggccgctgcttgattcccgtgttcgctctgggacgggcccaggagctgctgctcatcctg
gatgaatactggcagaatcacccagaactccacgacattcccatctattacgcctcatct
ctggccaagaagtgcatggctgtctaccagacctacgtcaacgcaatgaacgacaaaatc
cgcaaagcaatcaacattaacaacccctttgtgttcaaacacatcagcaatctgaagagc
atggaccactttgatgacatcggccccagcgtggtgatggcgtcgcctggtatgatgcag
agcggcctctccagggagctgttcgagagctggtgcaccgataagaggaacggcgtcatc
atcgctggatactgtgtggagggaacgctagctaagcacattatgtctgagccagaggag
atcaccaccatgtccggacagaagctgccactcaagatgtcagtggactacatctccttc
tccgcccacaccgactaccagcagaccagcgagttcatccgggccctcaagccgcctcat
gtgatcctggttcacggggagcagaacgagatggcccgcctgaaggcagcgctgatccgg
gagtacgaggataacgaccaggtccacatcgaagtgcacaaccctcgcaacacggaggcc
gtcactctcaacttcaggggagagaagctggccaaggtgatgggttccctggctgataag
aaatgtgctcagggtcagagggtgtctggcatactcgtcaagaagaacttcaattaccac
atcctgaatccatccgacctctctacatacacagagctggccatgagcacggtgaagcag
aaccaggccatcccgttcaccgggccgtactcgctgctcgtctgccacctgaggaacctg
acaggggacgtggaggagctggacggcacggagaagaaaacgctgaagatctttaaaagc
atcactctggtccacgaggtcggcatggtggtgctggagtgggtagccaatccgctgaac
gacatgtatgctgacgccatcaccaccgtggtgctggaggtccagtccaacccaaaggct
cagaaagtcatggagacgcagagtaccactatggacatggatgtcttccaaacccggtta
gaggtcatgctgcaggacatgtttggagaggactgtgtggacttcagcgatgggaaagtc
atttctgtgatggtggacggacagacggtccacatcagcttggagacgcgggcggtttac
tgcgaggacgacgtctcagaggacgactccctcagagagatggtggagctggccgtgcag
cggctctacgacgccctgaacccggcactctga
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