Xiphophorus couchianus (Monterrey platyfish): 114133972
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Entry
114133972 CDS
T05908
Symbol
nrde2
Name
(RefSeq) protein NRDE2 homolog isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114133972 (nrde2)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114133972 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
114133972
NCBI-ProteinID:
XP_027855931
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All DBs
Position
19:complement(9192346..9201591)
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AA seq
1201 aa
AA seq
DB search
MALFPAFAEVSEDKVEDSSKGELDWLNNKSFQAGNALSLHSRFLEKSIEKPNQREESVGK
DITCSDGEERGEDDGPPKKKKKKSEKKRKKKKKHKKKSGRLSDSSGSDSETIYPSDLKRE
DEGIGQQSASLGTRFSWLDDLQLPTENPFCVNCKPDLANWTYKSLYRGDVARYRRKGSSC
LGLDFRRQGVSWEDSETKKKKKKVAVNGNAADRYFSVATRKLLRAAPPVPVVPATPESGD
ALNSTTFLPLGDAEQHNTRHELDSRAQTSVNPLGVYDSSTSLWMQGKGPLLQDDVKQVTE
TEEKSEYVAGRTEEFNRRLREQPADTHLWIEFIRYQDELSAAAFGGGEEQQGSDLAERRK
SSYRAILEKKLSIADRAVETNPTCVALQLERLRICQDLWEPSTLAKEWKKLVFLHPNSAP
LWKKYLLFTQSYFSSFSVTKVNSAYGKCLSTLSAVRDGSMVSHPALPGIEEDMLDIFTQQ
CHFLRQSGHCEKAISLFQAMIDFSYFKPDSVKKLSTKQQVDFFETFWDSGEARVGEIGAR
GWKAWMTQQERGGWIQPPAEEEEEEEEEEDEEEVKDRSQPRGTVWLDVESSREAAHWLPW
RPDKAKGQSEEDCEDPDRQVLFDDIGPSLICLTSPELQLRFLLSFLAFLGFPVDFVLSAA
PYQPSILLENLSLLTQGAELQRPLTSFNLLETGINPVGHMTTLQGTRKWLGLGKQGEKLL
TNVFSMLQPFLPPPHRAVLSLSWMLYEKLKVLRCLRSGNKKRLRAQGKSSKRVAKRLLKE
PDNRSSLVLWREYAHLEWVLGNLDEARKVFSTATAMGGTRVLSSPALCELCLLWSQLEVE
NSAKEPGGVADATTSPAVAVLTRLAEGTSSSSSSQTLTPVSILKARRSYDQALSSSLSSL
DQKIQNHQLDGNAQDEPQEEKLRLRGLVGCYALFQYLTVSIQAANAVYSQARERMEDLHR
SLTPERQLDHDEATSRPSRSVLSHHVSWLASDCEALAVQQAALLRYNNGVGVCPLATLRQ
MLTCSLSAWPCSAPLWSVYIQVENRYHSAGRARRFFHTVTRDNSSSVVPRLFAIVAEQHR
KQLVDAAQRSCCSDEALPILPENGLSNRIRGLFEGATSTEMGAHCPLLWRMYIHFLVSEG
KVDKARGIFYKALQNIPWVKGLYMDAVQLFPDHLQEFVDLMTEKELRLRLPLEELDILLE
D
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggctcttttcccagcgtttgccgaagtgtcggaagacaaagttgaagattcgtcgaaa
ggtgaattagactggctcaacaataagagttttcaggctggaaatgctctttcccttcac
agtcgctttttagaaaagtccattgaaaagccaaaccaaagggaggaaagtgttggaaag
gatattacatgctctgatggggaagagaggggggaggatgatgggcctccaaagaagaag
aaaaagaagagtgaaaaaaagaggaaaaagaagaaaaagcacaaaaagaagagtgggagg
ctttcggacagtagtggatcagactctgaaaccatctatcccagtgatctcaagagggaa
gatgaggggattgggcaacagtctgcttcattaggaactcgtttttcatggttggatgac
ctccagttgcctacagaaaatccattctgtgtgaactgtaaaccagacctggccaactgg
acttataagtccctgtacagaggagacgtagctaggtatcggagaaaaggaagttcctgt
ttaggtctggactttcgcaggcagggagtcagctgggaggattctgagacaaagaagaag
aagaagaaagtcgcggtcaatgggaatgcagctgacagatacttttctgtagccactcga
aagctgctgcgggctgcgcctcctgttcctgttgtcccggcgacacctgaaagtggggat
gcactcaactcaaccaccttcctccctctgggtgatgctgaacagcacaacacaagacat
gagttagatagcagagcacagacgtcagtaaacccccttggcgtgtatgattcatccacc
tccctgtggatgcaggggaagggaccactgcttcaggacgacgtgaagcaggtcacagaa
acagaggaaaagtctgagtatgtggctggaaggaccgaagagtttaaccggcgactcaga
gagcagccagcagatacacatctgtggatagagttcattcgctaccaggatgagctgagt
gcagctgcatttggaggtggcgaggagcagcagggcagtgatttagcggagcgccgcaag
tcgtcctatagggcgattctggagaagaagctgagcattgctgacagagccgtggaaacc
aaccccacttgtgtcgctctgcagcttgagaggctccggatctgccaggacctctgggaa
ccctccactttggctaaagagtggaagaaactggtgtttctacatccaaacagcgccccc
ttgtggaagaaatatctgctttttacgcagagctacttcagcagtttctcagtgacaaaa
gtcaactctgcatacggaaagtgtctgagcacgctcagcgctgttagagacggcagcatg
gtgtcccacccagctttgcctggaattgaggaggatatgctggatatcttcacccagcag
tgtcatttcttgcggcagtctggtcactgtgagaaggcgatttctctgtttcaggccatg
atcgattttagctacttcaaacctgacagtgtgaaaaagctctccacaaagcagcaggtt
gatttctttgagacgttctgggacagcggagaggcgagagttggggagataggagcccga
ggctggaaggcctggatgacccaacaagagcgaggaggatggattcaaccccctgcagag
gaggaagaagaggaggaagaagaagaggacgaagaggaggtgaaagaccggagtcagccc
agagggaccgtctggctggatgtggagtcgtcccgtgaagcagctcactggttgccctgg
agacctgacaaagccaaaggccaatcagaggaggactgtgaggaccctgacagacaggtg
ctgtttgatgacatcggcccatcccttatttgtctgacttcaccagaactccaactgcgg
tttcttctcagtttcttggcctttctgggttttccggtagattttgtgctctctgctgcc
ccctatcagccgagcatactcctggagaacctctcactgctcactcaaggtgcagagctc
cagcgtcctctgacttcctttaacctccttgagacggggattaaccccgtaggtcacatg
accactctccaaggaacaaggaagtggttggggcttggaaagcagggtgagaagcttctc
accaatgtgttcagcatgctgcagcctttccttcctcctccccatcgagccgttctgtct
ctcagctggatgctgtacgagaagctgaaggttttgcgctgcctgcgcagcggcaacaaa
aagcggcttcgcgctcagggaaagagcagcaagcgggttgccaagagactcctcaaagaa
cccgacaatcgctcgtccctggtgctgtggagggagtacgcacacctggagtgggtgctg
ggcaacctggacgaggctcggaaggtgttctccacggcgacggcgatgggaggaaccagg
gtccttagtagtcctgctctgtgtgagctgtgcctcctgtggtcccagctggaggtggag
aactcggcaaaggagccgggaggagttgctgatgcaacgacgtcgccagctgttgcagtt
ctgaccagactggcagaaggaacgtcttcatcttcatcctcccagaccttaaccccagtt
tcaatcctgaaggccaggagatcgtatgatcaggctctgagctccagcctgtcatctctg
gaccagaagatccagaatcatcagctcgacggaaacgcccaagatgagccgcaagaagag
aagctgaggctaagaggtctggttggctgctatgctctgtttcagtacctaacagtgagc
atccaagctgctaatgctgtctacagccaggccagagagaggatggaggacctgcaccgc
tcattaacacctgaaagacagctcgaccacgatgaggcaaccagccggccaagtcgttcc
gtcctcagccatcatgtcagctggttggcttcagactgtgaggctttagcagtgcaacag
gcggctctgctgagatacaacaatggtgtcggtgtgtgtcctttggcaacactgaggcag
atgcttacctgttccctctcagcttggccctgcagcgcccccctgtggagtgtttacatt
caggtggagaaccgttaccatagcgccggccgggcacgccggtttttccacactgtaacc
agagacaacagcagcagcgtggtaccccgtctgtttgctattgttgctgaacagcatagg
aagcagctggtggatgcagctcagaggtcttgttgctcagatgaggccctgcccatacta
ccagaaaatggtctcagcaaccgcatccgcggactgttcgagggcgccacatcaacagag
atgggtgctcattgtcctctactgtggaggatgtacatccatttcctggtgtcagagggg
aaggtagataaagccagagggatattttacaaagcactgcagaacattccctgggtgaag
ggtttgtatatggatgcggtgcagttgttccctgaccacctgcaggagtttgtggatctg
atgacagagaaggaactccgactaagactgcctttggaggagctggatatactcctggaa
gactga
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