Xiphophorus couchianus (Monterrey platyfish): 114134044
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Entry
114134044 CDS
T05908
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114134044
Membrane trafficking [BR:
xco04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
114134044
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
114134044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WDR55
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40
WD40_Prp19
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Lgl_C
Beta-prop_WDR19_1st
Beta-prop_NUP159_NUP214
EIF3I
Synaptobrevin
Beta-prop_VPS8
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
114134044
NCBI-ProteinID:
XP_027856059
LinkDB
All DBs
Position
19:complement(4206044..4250671)
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AA seq
1198 aa
AA seq
DB search
MKKFNIRKVLDGLTAASSSSSSATAQPGTPRENDVVQETLQSEHFQLCKTVRHGFPYQPS
SMAFDPVQKILAVGTQTGALRLFGRAGVECYCQHESGAAVIQLQFLINEGALVSALADDS
IHLWNLRQKIPAILHSLKFNRERITYCHLPFQSKWLYIGSERGNIHIVNVESFTLSGYVI
MWNKAIELSTKTHPGPVVHISDNPMDEGKLLIGFECGVVVLWDLKSKKADYRYNYDEAIH
SVAWHHEGKQFVCSHSDGTLTTWNIRAPAKPAQIITPHGKQPKDGKKPEPCKPILKVEYK
TTRAGDPFMVLSGGLSYDTVGRRACLTVMHGKSTAVLEMDYPIVDFITLCETPYPNDFQE
PYAVVVLLEKDLVVIDLGQIGYPIFESPYPLSIHESPVTCCEYFADCPSELIPALYSVGS
RQKRQGYSKKEWPISGGNWGQGTQTYPEIIITGHADGSIKFWDASALMLQVLYKLKTAKV
FERARGKEEKPSTDIVDEDPFAIQTLFWCPESRMLCVAGVSAHVIIYRFSKQEATTEVVQ
LLEVRMQSEFSEADSPDPGGEQTPTLPTSAASSSPQEAEPPNQLTAGVNSSEGARDNIPC
LQVRSSPLKQSPGYQVELVVQLVWVSGEPPQQITSLAVNSSFGLVVFGNSNGLAVVDYVQ
KTLLLNLGTSELYSPSDPCQRQPRSPRKPRQPSGGFCDSNDGSNNSEDRCKSPTSGSTSP
CNSDDERKQNFIEKVKLKSRRFSKTVANDFAKMSRKISSSGEQKLDLDVSAPDAEDRSHR
WSPWLCKWPVGSMKNGKLAARMTRKLNVHKTKSDPHRYGKDNAFTRSRSSSVTSIDRESR
EAISSFYFCESFPRKSGSLASPCLLVGTTQGSVMMVALSLQPGGDQKLQQSLSFASCGTL
VQLKGGILTMALLDAAGTMLPPSCEVWYDPNASDEEKEKEKTRRRRPATPPSSQEGQDSQ
FAVLCSEKQANVVAMPSQTSIYKHNITETSFVLRADVVQMAGAYCIACFCANGHIMTLSL
PSLRPLLDINYLPLTDMRIARTFCFSNLGQALYLTSPTEIQRITYSQETCDNLQEMLSEL
FTPVETPEAPNRGFFKGLFGGGAQSLDREDLFGETTAGKASRSLAQHIPGPGSMEGMKGA
ASGVVGDLARARVALDERGQKLGELEERTAAMMASAESFSKHAHDMMVKYKDKKWYQL
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttaacataaggaaggtgctggacggcttgacagcggcgtcttcttcttcc
tcctccgcaactgctcagccgggtactcccagggaaaacgatgttgtccaggagactctc
cagtcggaacattttcagctgtgcaagaccgtgcgtcatggctttccatatcaaccgtcc
tcgatggcttttgaccccgtgcagaaaatcctggccgtcgggactcagaccggagctttg
aggctgttcggccgtgcaggtgtggagtgctactgtcagcatgagagcggggctgctgtc
atccagctccagttcctcatcaatgagggggcgctggtgagtgccttagctgatgacagc
atccacctgtggaacctgaggcaaaaaattccagctatcctgcattctctcaagttcaac
cgggagagaatcacatactgccacctgcccttccagagcaaatggctgtacatcggctca
gagcgaggaaacatccacatcgtcaacgtggagtccttcaccctctcaggctatgtcatc
atgtggaacaaagccatcgaattatccaccaagacgcacccggggcctgttgtgcacatt
agtgataaccccatggacgagggcaagcttctaattggatttgagtgtggggtcgtggtg
ttgtgggatttgaagtccaagaaggctgactaccgctacaattatgatgaggcgatccac
tcggttgcttggcaccacgaggggaaacagtttgtctgcagccactccgatggcactctg
accacgtggaatatacgcgccccggccaagcctgcacagatcatcacgccacatggaaag
cagcctaaggatggaaaaaagccagagccgtgcaagcctattctaaaagtggagtacaaa
actacaagagctggggacccgttcatggttctgtccggagggctgtcgtacgacacagtg
gggaggagagcctgtttgaccgtgatgcacgggaagagcactgccgtcctggagatggac
tatcccattgtagatttcataacgctctgcgaaactccatatccaaatgactttcaggag
ccttacgctgtggtggtcctccttgagaaggatttagttgtaatagatcttggacaaatt
gggtatccgatatttgagagcccctaccctctctccatccatgagtcaccggtgacgtgt
tgcgagtattttgccgactgcccctctgaactcattcctgcactttactctgtcggcagc
cggcaaaagcgacaaggctacagcaagaaggaatggcccattagtggtggaaactggggc
caaggcacacagacttacccagagattatcatcacagggcatgccgatgggtcaatcaaa
ttttgggatgcttctgcattaatgcttcaagtgctgtacaagctgaagactgccaaggtg
ttcgagagggcccggggtaaggaggagaagccgagcaccgacatcgtggacgaagacccg
tttgccatccagaccttgttctggtgtccggagagcaggatgctgtgcgtggctggagtt
tctgcgcacgtcatcatctacaggttcagcaaacaggaagccaccactgaagttgttcag
ctgctggaggttcggatgcagagcgagttcagcgaggccgactcccccgatccgggggga
gagcagacccccaccctgccgacctccgcagcttcctccagccctcaggaggccgagccc
ccgaaccagctcactgcaggtgtcaactcctccgaaggagccagagacaatataccatgc
cttcaggtgcggagctccccgctgaagcagtctccgggctaccaggtggagctggtggtc
cagctggtgtgggtgagcggggagccgcctcagcagatcaccagcctggcagtcaactcc
tccttcggcctcgtggtgttcgggaacagcaacggtctggcagtggtggactacgtccag
aagaccctgctgctcaacctgggcacctcggagctgtatagcccgtcggacccctgccag
aggcagcctcgctccccgcggaaaccacgccagccttctggaggattttgcgactccaac
gatgggtctaacaactcagaggaccgatgcaaatcacccacgtcaggatctacctcaccc
tgcaattcagacgatgaacgaaaacagaacttcatagagaaggtgaagttaaaaagcaga
cgcttttccaagacggttgccaatgactttgccaagatgtcgcggaaaattagctcgtct
ggtgagcaaaagctagatctggatgtgtctgccccggacgcagaggatcgctcccaccgg
tggtccccttggttgtgtaaatggcccgttggtagtatgaaaaatggcaagctggcggcc
aggatgacccggaagttgaatgtgcataaaactaagtcagacccgcaccgatatgggaag
gataacgcattcacccgctcgcgtagctcaagcgtaaccagcatagacagagaatctcga
gaggccatctcctccttttacttctgcgagagtttccccaggaagtcgggcagtctggcc
agcccctgtctgctggtggggaccacacagggctccgtgatgatggtggccctcagcctg
cagccgggcggcgaccagaagctccagcagtcgctcagctttgcctcctgcggcaccttg
gtccaactcaaaggaggcatcctgaccatggccctgctggatgctgctggaactatgctg
cccccttcctgtgaagtgtggtacgaccccaacgcctccgacgaagagaaagagaaagag
aagacccggaggcgcaggccggccacgcctccgtcctcacaggaaggccaggactcccag
tttgccgtgctgtgttcggagaagcaggccaacgtggtggccatgccgtcccaaaccagc
atctacaaacacaacatcaccgagacctcgtttgtgctgcgcgccgacgtggtgcagatg
gccggggcttactgcatcgcctgtttctgtgccaacggccacattatgaccctgagcttg
cccagtctgcggcctctgctggacatcaactacttgccgctgacagatatgcggatagcc
agaacgttttgcttctctaacttgggccaggctctgtacctgacctcccccaccgagatc
cagaggatcacctacagccaggagacgtgcgacaaccttcaggaaatgctcagcgagtta
tttacccccgtggagacgccggaggctccgaacagaggctttttcaaaggcctttttggt
ggaggagctcagtctttggacagggaagacctctttggtgaaacgacggccggtaaggcc
tcgcgtagcctggcccagcacatcccaggcccgggcagcatggagggcatgaagggcgcg
gcgtccggggtggtgggcgacctcgcccgtgcccgggtggcgctggacgagagagggcag
aaactgggagagctggaggagaggacggcagccatgatggccagcgcggagtccttctcg
aaacacgcccacgacatgatggtgaagtacaaagataaaaagtggtaccagctctga
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