Xiphophorus couchianus (Monterrey platyfish): 114134116
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Entry
114134116 CDS
T05908
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03013
Nucleocytoplasmic transport
xco03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114134116 (pnn)
03015 mRNA surveillance pathway
114134116 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114134116 (pnn)
03041 Spliceosome [BR:
xco03041
]
114134116 (pnn)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
114134116 (pnn)
Spliceosome [BR:
xco03041
]
Complex C
Other components
EJC/TREX
114134116 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
114134116
NCBI-ProteinID:
XP_027856236
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Position
19:9009989..9015397
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AA seq
665 aa
AA seq
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MAVAVRSLQDQLEKAKENLKNVEDNIRKLTGRDPNESRPGQLRRLSGPMVGLGGGRGRGI
NLLRRSLSDMGSSGPPAKQRDIEGALLRLAGDQRARRDVRHDSDAEDDDDVKKPALQSSV
VATSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESNVSSEKLKRRSEIEQK
LEVQAEAERKKVENEKRELFEERRAKQTELRLLEQKVELAQLQEEWNSHNNHLVKYIRTK
TKPHIFYRPGKMCSATQKLLEESTKKLNAVFEERREAFAEHLSKMESRPRRQPNRDQDGS
SASRMDRPAEGKPAGQVEKQRGKRGESRREEDEDEDEDEEEEREKEIGGGDAEEGEKEEL
VKIEEVEEEVMEVREEGSKEEAGEEQKEKSEKAASPESEEMEVEKEDKGKEVEVETDRKQ
ESTEIQEEKTPDVQSCEAAVSGLEVPDSSDEPPQSLAAGEPAAQSPVTETASPSQEPQKA
SAALAQDPTSPTQDNMATESSVQDSTAENQTEERKSKEDEEEGPQKLPDSKEVDAPAKEE
GEEQGRGRKKEKDAKKHRSRSNSSSSSSSGSSSSGSSSSSSGSSRSSSSSSSSSTSSSRS
RDSDKRKRRPSDRGRDKKKEERSRQKSGGRDSAERRKRRSEEKKGRPSRSDREHKNRGDR
KDKRR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggctgtgcggagcttgcaggaccagctcgaaaaagccaaagaaaacttgaaa
aatgtggaggataatattcgtaaactgaccgggcgggaccctaatgaatcacgaccgggt
cagctgcgtcggctcagtggccccatggtaggcctgggaggaggtagaggcagaggaatc
aatctcctcagacgcagtctctcagatatgggaagcagcgggccccctgccaagcaaagg
gacatcgaaggagctctgctgaggctggcaggtgatcagagggccaggagagacgtgcgt
catgacagtgacgccgaggacgatgacgatgtcaaaaaaccggcgttgcagtcatctgta
gtagctacctccaaggagagaacacgccgagacctcattcaggatcaaaccatggatgaa
aaggggaaacagaggaatcggcgcatgtttggcctgctgatggggacactgcagaaattc
aagcaagaatcgaacgtctcatctgagaagctaaagcgacgttcagagatagagcagaag
ctcgaggttcaagctgaggctgagaggaaaaaagtagagaatgaaaagcgagaactgttc
gaggagagaagagccaagcagacagagctgagactgctggaacagaaagtagaattggct
cagctgcaagaggagtggaacagccacaataatcacctggtgaaatacattcgcaccaaa
accaagcctcatatcttctaccggcctggaaaaatgtgctccgcaactcagaaactcctc
gaagaatccaccaagaaactcaatgctgtgtttgaggaaaggcgtgaggcatttgccgaa
catttgagcaagatggagtcgcgtccccggcgccagccgaaccgcgaccaggatggcagc
tcagcctcaaggatggaccgcccggcggagggtaagccagcaggtcaggtagagaagcag
agaggtaaaaggggggaatccaggagggaggaagacgaggatgaggatgaggacgaggag
gaggaaagggagaaggagataggaggaggtgatgctgaggagggggagaaagaggagttg
gttaaaatagaagaggtggaggaggaagtgatggaggtgagagaggagggaagcaaggag
gaggcaggagaggagcagaaggagaagagtgagaaggcagcaagtccagagtcagaggag
atggaggtagagaaggaagataagggtaaggaggtagaggtagaaacagacaggaagcag
gagtccacagaaatccaagaagaaaagactccagatgttcagagctgtgaagcagctgta
agcggcctagaggtcccagactccagcgacgagcccccacagagcctcgctgcgggagaa
ccagcagcacagtcacccgtgacggagaccgcctctccaagtcaagaaccccaaaaggcc
tctgctgccctcgctcaggatccaaccagtcccacacaggacaacatggctacagagtcc
agcgtccaggactccacagcggaaaaccagacagaggagagaaaatcaaaggaggacgaa
gaggagggcccacaaaagctgcctgattctaaggaggttgatgcccctgcaaaggaggaa
ggggaggaacaaggcagagggagaaagaaggagaaagacgcaaagaaacatcgcagtcgt
agcaacagctcctcctcttcctcgtctggatcctcctccagcggtagctcttcctcatcc
tccggatccagccgatcctcgtcttcgtcctcatcgtcctcgacgtccagcagccgcagc
cgagacagcgacaagcgaaagaggaggccgtccgatagaggcagagacaagaagaaggag
gaaagaagtcgacagaagtcaggagggagagactcggcggagaggaggaagagaaggagc
gaggagaagaagggcaggccgtcccggagcgatagggagcataaaaatagaggagacagg
aaggacaagagacgctga
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