KEGG   Xiphophorus couchianus (Monterrey platyfish): 114134136
Entry
114134136         CDS       T05908                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03082  ATP-dependent chromatin remodeling
xco03083  Polycomb repressive complex
xco04110  Cell cycle
xco04330  Notch signaling pathway
xco04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    114134136
   03083 Polycomb repressive complex
    114134136
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    114134136
   04350 TGF-beta signaling pathway
    114134136
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xco03036]
    114134136
Enzymes [BR:xco01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     114134136
Chromosome and associated proteins [BR:xco03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     114134136
   HDAC complexes
    Sin3A-HDAC complex
     114134136
    BRAF-HDAC complex
     114134136
    REST complex
     114134136
    SHIP complex
     114134136
    MiDAC complex
     114134136
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     114134136
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    114134136
  Chromatin remodeling factors
   NuRD complex
    114134136
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 114134136
NCBI-ProteinID: XP_027856277
LinkDB
Position
19:11992706..11997457
AA seq 486 aa
MAFTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIRFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLG
GGGYTIRNVARCWTFETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEDDPNKRISIRAHDKRIACEEEF
SDSEDEGEGGRRNAASYKKAKRTEGEKETEEKKKSTEETKEVKEEEKVPEEEKMDTSKPN
EEPKTP
NT seq 1461 nt   +upstreamnt  +downstreamnt
atggcatttacctcccaaggcacaaagaaaaaagtttgctactactatgatggtgatgtt
ggaaattactactatggtcagggccatcccatgaagcctcaccgaatccgcatgacccac
aacctgctgctcaactatgggctctacagaaagatggagatctatcgtccacacaaagcc
agtggagaagagatgaccaagtatcacagtgatgattacatcaggttcttgcgctctatc
aggccagacaacatgtcagaatacagcaaacagatgcagagatttaatgtgggtgaggac
tgtccggtcttcgatggtttgttcgagttctgccagctctcagcaggaggctccgtcgcc
ggtgccgtaaagttgaacaaacagcagacagacatcgcgatcaactgggccggagggctt
catcacgccaaaaagtctgaagcctctgggttttgctacgtcaacgacatcgtactggca
atcctggagttactgaaataccatcagagagttctctatatagatattgacatccaccat
ggagacggtgtggaggaggctttctacaccacagatcgtgttatgactgtgtccttccac
aagtatggagagtacttcccaggcaccggtgacctgagggatattggtgctggaaagggt
aaatattatgctgtaaattatccactgagggatgggatcgatgatgagtcctatgaagcc
attttcaaacctatcatggcgaaggtgatggagatgtaccagcccagtgctgtggtcctc
cagtgtggagccgactctctgtcaggggacagactgggctgcttcaacctcaccattaaa
ggccatgccaagtgtgtggagtacattaagagcttcaacctgccgctgctgatgctggga
ggaggcggctatacgatccggaacgtggctcgttgctggacatttgagactgctgtggcc
cttgatagctccatccccaatgagctcccatacaatgattactttgagtactttggacca
gacttcaagttgcacatcagcccctccaatatgaccaatcagaacacaaacgactacctg
gagaagatcaagcagcgcttgtttgagaacctgcgcatgttgcctcacgcccccggagtc
cagatgcaagccatcccagaggacgccgtgcaggaggacagtggcgacgaagaggacgat
ccaaacaaacgcatatctatccgcgctcacgacaaaaggatagcgtgcgaggaagagttc
tcggactctgaggacgaaggcgaaggcggtcgcaggaatgcagccagctacaagaaagcc
aaaaggaccgaaggagagaaggagacagaggagaagaagaagagtacagaggaaacaaaa
gaagtaaaagaagaagagaaggtaccagaggaggaaaaaatggacacgtcaaagccaaat
gaggaacccaagacaccttga

KEGG   Xiphophorus couchianus (Monterrey platyfish): 114155738
Entry
114155738         CDS       T05908                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03082  ATP-dependent chromatin remodeling
xco03083  Polycomb repressive complex
xco04110  Cell cycle
xco04330  Notch signaling pathway
xco04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    114155738
   03083 Polycomb repressive complex
    114155738
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    114155738
   04350 TGF-beta signaling pathway
    114155738
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xco03036]
    114155738
Enzymes [BR:xco01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     114155738
Chromosome and associated proteins [BR:xco03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     114155738
   HDAC complexes
    Sin3A-HDAC complex
     114155738
    BRAF-HDAC complex
     114155738
    REST complex
     114155738
    SHIP complex
     114155738
    MiDAC complex
     114155738
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     114155738
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    114155738
  Chromatin remodeling factors
   NuRD complex
    114155738
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 114155738
NCBI-ProteinID: XP_027891573
LinkDB
Position
13:complement(4192902..4200719)
AA seq 482 aa
MALSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAG
AVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGG
GGYTIRNVARCWTFETAVALDSSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHADSGDEDEEDPDKRVSIRAHDKRIACEEEF
SDSEDEAEGQGGGRRNAANHKKAKRVKKEEEKEGEEKKEVKEEEKEEEKMDTSGPKEEIK
TT
NT seq 1449 nt   +upstreamnt  +downstreamnt
atggcgctgtctcaaggaacaaagaaaaaagtttgctattattatgacggtgacgtgggg
aactactactacggtcaaggtcatcccatgaagccccacaggatccgcatgacgcacaac
ctcctcctcaactacggactctacaggaaaatggagatctataggccgcacaaagccagc
gctgaagagatgaccaagtaccacagcgacgactacatcaagtttctgaggtccatccgt
ccagacaacatgtctgagtacagcaaacagatgcagagatttaatgtcggagaggactgt
ccagtttttgacggtctgtttgagttttgccagctctcggcaggtggctcagtcgctgga
gcagtgaagctgaacaagcagcagacggacatcgccatcaactgggctggcggactccac
cacgccaagaagtctgaggcgtccggcttctgctacgtcaacgacatcgtcctcgccatc
ctggagctgctgaaataccaccagagggtgctctacatagacatcgacatccaccatggc
gacggcgttgaggaggccttctacaccacagacagggtcatgaccgtttccttccacaaa
tacggggaatacttccccggcactggagatctgagggacatcggagcaggaaaaggcaag
tactatgccgtaaactaccctctgagagacggcatcgacgatgagtcttatgaagccatc
ttcaaacctattatggctaaagtcatggagatgtaccagcccagtgctgtggttctgcag
tgtggagcagattctctttctggagaccgactgggctgcttcaacctcaccatcaaaggc
catgccaagtgcgtggagtacatcaaaagcttcaacctacctctgctgatgctgggcgga
ggcggctacaccatccgcaacgtcgcccgctgctggaccttcgagacggccgtggccctg
gactcatccatccccaacgagttgccctacaacgattactttgaatacttcgggcccgac
ttcaagctgcacatcagcccctccaacatgaccaaccagaacaccaacgagtatctggag
aagatcaagcagcggctcttcgagaacctgcgcatgctgcctcacgcacccggagtccag
atgcaggccatccccgaggacgccccacacgccgacagcggagacgaggacgaggaggac
cccgacaaacgcgtttccatccgggcccacgacaagaggatagcctgtgaggaagagttc
tcagactctgaggacgaggctgaggggcaaggtggcggccgcaggaacgcagccaatcac
aaaaaggcaaagagagtgaagaaggaggaagagaaggaaggagaggaaaagaaagaagtg
aaagaggaagagaaggaggaggagaagatggacacatctggaccaaaagaagagataaag
acaacttga

KEGG   Xiphophorus couchianus (Monterrey platyfish): 114159004
Entry
114159004         CDS       T05908                                 
Symbol
hdac2
Name
(RefSeq) histone deacetylase 2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03082  ATP-dependent chromatin remodeling
xco03083  Polycomb repressive complex
xco04110  Cell cycle
xco04330  Notch signaling pathway
xco04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    114159004 (hdac2)
   03083 Polycomb repressive complex
    114159004 (hdac2)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    114159004 (hdac2)
   04350 TGF-beta signaling pathway
    114159004 (hdac2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xco03036]
    114159004 (hdac2)
Enzymes [BR:xco01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     114159004 (hdac2)
Chromosome and associated proteins [BR:xco03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     114159004 (hdac2)
   HDAC complexes
    Sin3A-HDAC complex
     114159004 (hdac2)
    BRAF-HDAC complex
     114159004 (hdac2)
    REST complex
     114159004 (hdac2)
    SHIP complex
     114159004 (hdac2)
    MiDAC complex
     114159004 (hdac2)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     114159004 (hdac2)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    114159004 (hdac2)
  Chromatin remodeling factors
   NuRD complex
    114159004 (hdac2)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 114159004
NCBI-ProteinID: XP_027896813
LinkDB
Position
15:complement(22504969..22514332)
AA seq 489 aa
MAYTTAGGTKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEVYRPHK
ATADEMTKYHSDDYIKFLRSIRPDNMSEFSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSA
AGSVKLNRQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYG
QIFKPVMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIRGHAKCVEYIKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDTDIPDELPYNDYFEYFGPDFKLHISPSNMTNQNTMEY
MDKIKQRLFENLRMLPHAPGVQMQAIPEDAVPEDTVDEDTEDPDKRLSIRATDKRIACDE
EFSDSEDEGQGGRRNTANHKKSAKRPKVDEEKEREEKKADVKEEDKTKDSGSEKAESKGT
VKTEQTSST
NT seq 1470 nt   +upstreamnt  +downstreamnt
atggcttacaccacagcaggtgggaccaagaagaaggtctgctactactacgacggtgac
ataggaaattattactatggacaaggtcatcccatgaagccgcaccgcatccggatgacc
cacaaccttcttctgaactacgggctgtacagaaagatggaggtctatcgaccacacaaa
gccactgcagacgagatgaccaagtaccacagtgacgactacatcaagttcctcagatcc
atccggccggacaacatgtctgagttcagcaagcagatgcagcgattcaacgttggggag
gactgccctgtgtttgacggcttgtttgagttctgccagctgtctgcagggggctctgct
gctggctcggtgaagttgaaccggcagcagacggacattgcagtgaactgggccggagga
ctgcaccacgccaagaagtctgaagcttcaggcttctgctacgtcaatgacattgtgttg
gccatcttggagctgctcaagtaccaccagagggtgctctatattgatattgacatccat
catggcgatggagtagaggaggcattctacaccacagacagagtcatgaccgtgtccttt
cataaatacggggagtacttccctggaaccggagacctcagggacatcggagctggaaaa
ggcaaatattacgctgtcaacttcccactgagggacggcatcgacgacgagtcctacggg
caaatcttcaaacctgtgatggccaaggtgatggagatgtaccagcccagcgccgtggtg
ctccagtgtggcgccgactctctgtctggagaccgcctcggctgcttcaacctcaccatc
cgaggtcacgccaagtgtgtggagtacattaagtcgtttaacctcccactgctgatgttg
ggtggaggaggatacacgatccggaatgtggctcgctgctggacctatgagacggccgtc
gctctggatacagacatccctgatgaacttccatacaatgactattttgagtactttgga
cctgacttcaagctgcacatcagcccctccaacatgacaaaccagaacacaatggagtac
atggacaagatcaaacagcggctgtttgagaacctgcggatgctgcctcacgcccctggg
gtccagatgcaggccatcccagaggacgctgtcccagaggacacggtggacgaggacact
gaggaccctgacaaacgcttgtccattcgtgccacagataagaggatagcctgtgatgaa
gagttctctgactctgaggatgaggggcagggcggcaggaggaacacagccaatcacaag
aagagtgccaaaagaccaaaagtggacgaggagaaggagagagaggagaagaaagcagat
gtgaaagaagaggataagacaaaagacagcggctcagaaaaggctgaatccaaaggaacg
gtgaagaccgagcagaccagcagcacctga

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