Xiphophorus couchianus (Monterrey platyfish): 114134312
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Entry
114134312 CDS
T05908
Name
(RefSeq) AT-rich interactive domain-containing protein 1B-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
114134312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114134312
03021 Transcription machinery [BR:
xco03021
]
114134312
03036 Chromosome and associated proteins [BR:
xco03036
]
114134312
Transcription factors [BR:
xco03000
]
Eukaryotic type
Helix-turn-helix
ARID
114134312
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
114134312
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
114134312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
114134312
NCBI-ProteinID:
XP_027856632
LinkDB
All DBs
Position
19:13346087..13541450
Genome browser
AA seq
2221 aa
AA seq
DB search
MAAQVASAPTRTNNKNKKLSGALAPELNSGKSGGGGGGAGTAQRSGQMLGAGDGTLNNVD
HHRRGELGSMVHSTSAAHKAPDGHDKTGINISASNSNTSPMEAALIANHKLKCAASGDAP
QPQQQQPPPPQFGQFAPHQQRQSNNSNNGQPPRGDRSVDHQQHGGKENLLVGQEETQQQH
GPGKGEGDLTCKPTERMMGSRFEHSNLGPPTNNSEFNNSYYTSRPCYDQHAGQQQQSSGM
GVTQDSNEGGYHNSQYGQYPAYRAGYGGGAYGMIGSSGCRQPGNMMMGSNSSATHSKSPA
SGGFQRYPGQTQQQQGPSGATPTLNQLLTSPSPMMRGYGGAYQDYGGPTPQQQAGMALGK
DVGPQYGASTGHWGGQQRNHPLSMNAGSGGQGLGRTQVPSMDFMAMKRSQMYGMTNNPYS
TPQQPGAGNYPSSQPYASPPSHRYPMSMQGRSQMSMSGMQYPQQQQVAPYGQQSMGGFSR
EQQGGQQGTPPYFSPPQQTPTGLSQSSYLQPRPPPQQETQQESYSMRGPAQANSGKTSNE
DGVAQDRPSSLPDLSGSIDDLPTGTEAGLGSAVGAGGSSNGSSGGSSQGEPGGAGNQGQS
PFSPHASPHLPGQRSGPSPSPVGSPAGSTQSQPSRSGSRPISPASGPPANTTAPGSVVAP
LSSGNGPDAAHLPITRSPMAQERGFMSNMQRNQSGSQFAPPQSGPPMSPHPSHGGSMYPS
MGTYSQSGPAGPYGPQGPQYGHQGNYPRPSNYIGSAGSNYSGPGLSNSLGMNATSPMHGQ
GPGGRSHAPGSQNRTYPIMGPTSPSMPQPAGPGMGPPSNRKPQDGAVANSVHNRQGNYQA
PGINQVSSGSYSQPTSNNSSTTGNGQGPGYGMPPAGATALSGDNIMSPESKQKMDVKDDS
GPNNEPHKPKLQDGYVNNNSSSVSQPATPGGTLPVPSPLSPSPASLSSYHGDDSDSISSP
PWPLKTPCSPQKVNPNSSSIGGERISRLYELGSEPERRSWVERYLTFMEERGTPVSQLPV
VGKKPLDLWKLYVAVREIGGLAMVNKNKKWRELSSTLNVGTSSSSASTLKKQYIQYLFAY
ECKMERGEEPPIDSNSGGSLTEGDSRKQVKIQPPSPANSGGSLQGPQTPQSSGSSSTAEA
AGDLKPPTPATTPLGQVTPLPPNRSSVSVQDPFSEVSDPAFQKRTSSLPPSAPYQQALGM
PDMMMRMQYDAKDPFAGMRKMAGADPYIPSQMSSGGMQDLYSRPPSGLSMSQRSQYPYGP
GYDRRPDHMMGMEGTMGPPGSQNSMGHSNSEGNMYSPSRYSSQQRHDGYGQQYPGMPYGM
HPSGMYPQQQGYKRQLDGMYGPPPKRHESDMYAMQYTNQQPDVYNHYSGGYSGPDHRPIQ
GQFPYPYHRDRMAPSGQSQHSMMGGGPASNHAPEGPNMWPSRTDLSYSYHSRQGPPSQMQ
PYGSICRDDIEGRSAHDHWLRQPPYISSSGGMAPMSSRHSSYSNSPTMANHLPRAPSPGA
FQRSMESRMSPSKAPFMSPMKMPKPGMAMMGSQGSGPNGQFPPNLRRDLNYPPGSVEATM
PALKPRRKLTSKDSGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVASFNLSQLP
GFLELIVEYFRRCLIEIFGILEEFEVRTMVPKNDLHCDPTQKQNATLEKETDSANLSGSE
LSSATEIQERQTGVIKEEMSPVTEEQAEVPEKEQDPDVTKKKKNSNKGQSEKGLKEVEEK
ETKKGCLDEPSAETESKPKQASKYDKLPIKIVHKDDPIEDITERLGYVTEFDSGLIHWQA
GGGDSTAHIQTHFELRSDLPARGGTKTLNENKPENNTEGEDSKKLKHITATIDDVLFARV
DALSYAHPARSLPSYPFRVHPDGEDDHITLLEDEPRCLDEAPLCTTSSWQDSLSKRCLCV
SNIVRSLSFIPGNDSEMSHHPALVLLLGRLLLLHHVHPERNRSAPTYQKDEQQERGLSSS
KEEWWWECLSLLRENAMVTLSNIAGHLDLSTYSDTICLPILDGLLHWMVCPSAEAQDPFL
STSPHSQLAPQRLVLECLCKLSIQDGNVDLLLATPPFSRQEKFFAVLVRYVGQRKAQVYR
EMAVAILSHLAQGDPTAARAIALQKASVGNLVTFLEDGVSMAQYQQNPHNLLHMGHPPMD
PPSVNMMCRAAKGLLAMAKVEENKKEFVLYESRLLDISISSVLNTGVVAIVCQVLFHLGK
L
NT seq
6666 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcatcggctccgaccagaactaataataaaaataagaaattatcc
ggcgctttggctccggagctcaattcggggaaatccggaggaggaggtggaggagcaggg
accgcgcagcgcagcggacagatgctgggtgccggcgatggaactctgaataatgtagac
catcaccgccgaggcgagctcggcagcatggtccattcaacttccgcggcgcacaaagct
ccggacggccacgacaagaccgggattaatatctcggcgtcaaactcaaacacttccccg
atggaagcggctctgatcgcgaaccacaagctcaaatgtgcggcgagcggagatgcgcct
caacctcaacagcagcaaccaccgccgccgcagttcggccagtttgcgccacatcagcag
cgacaaagtaacaacagcaacaacgggcagccccctcggggggacagaagtgtggaccac
caacagcacggtggtaaggagaacctgttggtggggcaggaggagactcagcagcagcac
ggcccggggaaaggtgagggggacctcacctgtaaacccacggagaggatgatgggctcc
aggtttgaacactccaacttgggtccccctactaacaactctgagtttaataacagctat
tacacttcaaggccgtgttatgatcaacatgccgggcagcaacaacaaagcagtggaatg
ggggtaactcaggactccaatgaaggggggtaccacaacagccagtacggccagtacccc
gcgtaccgggcgggctacggcggaggggcctacgggatgattggctcctcaggatgcagg
caaccaggcaacatgatgatgggcagcaactcctctgcgacccacagcaagtcccctgct
tcgggtgggtttcagaggtacccggggcaaacacagcagcagcaggggccctcaggggcc
acgccaaccctcaatcagctgctcacgtcccccagcccgatgatgcggggttacggaggt
gcttatcaggactacggcggcccgacgcctcagcagcaggcgggcatggctttggggaaa
gacgtgggcccccaatatggagccagcactggccattggggagggcagcagaggaaccac
ccgctttcaatgaacgcaggcagcggagggcagggcctcggcagaacacaggttccctcc
atggatttcatggctatgaagcgctcacagatgtatggaatgaccaacaacccgtactcc
actcctcaacagccaggtgccggaaattacccctcaagccaaccatatgcgtcacctcct
tcacatcgatatccaatgagcatgcaggggaggagccaaatgagcatgagtggcatgcaa
taccctcaacaacagcaggttgcaccatatggccagcagtcgatgggagggttcagcagg
gagcagcaaggagggcagcagggaacccctccgtacttcagtcctcctcagcagacgccc
acaggcttgtcccagagttcctacctgcagcctcgaccacctccgcagcaggaaactcag
caggaaagctacagcatgagaggacctgctcaggcgaattctgggaagaccagcaacgag
gacggagtcgcccaggaccgtccttccagtctgccggatctctctggctcgattgatgac
ctccccactgggacagaggccggcctgggctcggctgttggagctggcggatcctccaac
ggcagcagcggcggtagcagccaaggagagccgggaggcgccggtaaccagggacagtcc
cccttctctccccatgcctccccccacctccctggccagaggagtgggccctctccctct
ccggtggggtccccagcaggctccactcagtcccagccgtcccgttcgggctcaagacca
atttcccctgccagtggtccccctgccaacaccacagctccaggttcagttgtggcccca
ttgagctctggaaatggacccgatgcagcccatctgccaatcacacgctcccctatggct
caggagagaggttttatgtccaacatgcagagaaaccagtctggctcgcagtttgcacct
ccccagtctggacctcccatgtcacctcacccatcccacggaggctcaatgtatcccagc
atgggaacatattcacagagtggccctgcaggtccctatggacctcaaggaccccaatat
ggacaccaaggtaactaccctcggccctctaactacattgggtcagccggaagcaactac
agcggccccggcctgtccaacagtctggggatgaatgccactagccccatgcacggacaa
gggcccggaggacggagccacgccccagggagccagaacaggacctacccaataatgggt
ccaacttctcccagcatgccgcaaccagctggaccagggatgggtcctccatctaatcgc
aaacctcaggatggagctgtagccaactcagtgcacaacaggcagggaaactaccaagcc
cctggtatcaaccaagtgagctctggctcctacagtcagccaacgagcaacaacagttca
acgacaggcaacggacaaggtccgggctacggtatgccacctgcaggagcaacggccctc
tcaggagacaacataatgagcccagaaagtaaacagaaaatggatgtcaaagatgacagc
ggcccaaacaacgagccacacaaaccaaagctgcaggatggttacgtgaacaataacagc
agcagtgtttcccaaccagccactccaggcggtaccctgcctgtgccctcccctctctct
cccagtcctgccagcctgtcttcctaccatggcgacgacagtgacagcatcagtagccca
ccgtggcctctgaagaccccctgtagtccccagaaagtcaaccccaactcgtcctccatt
ggtggcgagcggataagccggctgtatgaactcggttcagagccagagaggagatcttgg
gtggagcgctacctgaccttcatggaggagcggggtacacctgtttctcagctcccagtt
gtgggcaagaagccacttgatctctggaagctctatgttgctgttcgggaaataggaggc
ctcgccatggttaacaagaacaagaagtggcgcgagctgtccagcactctgaatgttggt
acgtccagcagctctgccagcacgctcaagaagcagtacatccagtatctgtttgcctac
gagtgtaagatggagagaggagaagaaccaccaatagacagcaacagcggtggcagcttg
actgaaggggacagcaggaagcaggtcaagatccagccgccctcacctgccaactcaggt
ggctcactccaaggtccacaaacgccccagtcatccggcagcagctctacagcagaggca
gcaggcgacctgaaaccacccacacctgccaccaccccgctgggacaagtcactccactg
ccccccaacaggagcagtgtaagcgtacaggaccccttctcggaggtgagcgacccggcc
tttcagaagcggacgagcagcctgcccccctcagctccataccagcaggccctcggcatg
cctgacatgatgatgaggatgcagtacgacgccaaggaccccttcgcggggatgaggaag
atggcaggagctgatccatatataccaagccagatgtccagtggtggtatgcaggacttg
tacagtcggcctccatcaggcctgagcatgagccagcggtcccagtatccctatggacca
ggttatgaccggagacctgaccatatgatgggtatggagggaaccatgggtccacctgga
agtcagaatagcatgggacactctaatagtgaaggcaacatgtattctcccagcagatac
tcctcacagcaaagacatgacggttatggtcagcagtatcccggcatgccatatggcatg
catccatctgggatgtacccacagcaacagggctacaaacgacagttggatggaatgtat
ggtcccccacccaaaagacatgagagtgacatgtacgctatgcagtacaccaaccagcag
ccagatgtgtacaatcactacagtggtgggtactcaggccctgatcacagacccatccaa
ggacagtttccttacccgtaccatcgtgaccgaatggccccatcaggccagagccagcac
agtatgatgggtgggggtcctgcttctaaccatgctcctgagggacccaacatgtggcct
tcaagaacagacctcagctattcctaccacagcagacaggggccaccatcacaaatgcag
ccgtatggctctatttgcagagatgacattgaaggtcgctccgcgcacgaccactggctc
cgtcagcctccctatatatcatcatcaggtggcatggcccccatgtcttcacgtcattca
tcttattccaattctccaaccatggccaaccatctgcctcgagcgcccagcccaggggcc
ttccagcgctcaatggaatctcgaatgtcacccagtaaagcccctttcatgtctcccatg
aagatgcctaagccagggatggccatgatgggctcacaaggcagcggaccaaatggtcag
tttcctcctaacctgagaagggacctgaactaccctccagggtcagtcgaagccacaatg
ccagctctaaagccaagacgcaagctaacatcaaaggacagtggaacacctgaagcctgg
cgtgtgatgatgtctctgaagtctggactgctggcagaaagcacttgggcattagacacc
atcaacatcctgctatatgatgacagcacagtggcctccttcaacctttcccagttgcca
ggattccttgagctaattgtggagtactttcgccgctgcctgattgagatttttggaatc
ttggaagaatttgaggttcggacaatggttcccaaaaacgatctacattgtgatcctacc
cagaaacagaatgctactcttgagaaggaaactgactctgcaaacctgtcaggatctgaa
ttatcctcagcaacagaaatccaggagaggcaaacaggagttatcaaggaggaaatgtca
cctgtcactgaagagcaggctgaggtgccagaaaaagagcaggatcctgatgtgaccaag
aaaaagaaaaacagtaataaaggacaatcggaaaaaggactgaaagaagtggaagaaaaa
gaaactaaaaaaggttgtttggatgagccttctgcagaaacagaatctaaacctaaacag
gccagtaaatatgataaactccccattaagattgtgcacaaagacgacccgattgaagac
ataactgagcgcttgggttatgtcactgagtttgacagtgggctgatacactggcaggca
ggtggaggtgattccactgcacacattcagacacactttgaactgcggagtgatctgcca
gccagggggggtaccaaaacattgaatgagaacaaaccggaaaataatacggaaggggaa
gatagcaaaaaactgaaacatatcaccgctactattgatgacgttctgttcgccagggtt
gacgccctgtcgtatgcccatcctgctcgatctttgccatcttaccctttcagggtgcat
ccagatggggaggatgaccacattacccttctggaggatgagccccgctgcctggatgag
gctccactctgcacaacctcctcctggcaggactcactctccaagaggtgcctttgtgtt
tccaacatcgtgcgaagtctgtcctttatccctgggaatgacagtgaaatgtctcaccat
cctgcgctcgttcttcttttgggccggctgcttttgttacaccatgttcacccagagaga
aataggtcagcaccgacctaccagaaggacgaacaacaggagcggggactgtcaagtagc
aaagaggagtggtggtgggaatgcctgagtttgctcagggagaatgccatggtcacgctt
tccaacattgcaggacaccttgatctctcaacctattcagacaccatctgcctccccatc
ctggatggccttctccactggatggtttgtccctcagctgaagcgcaggacccctttctg
tcaacatccccacactcccaactagctccccagaggctggtgctggagtgcctttgtaag
ctcagcatccaagatggcaatgtggacctcctgctagccactccacctttcagcagacag
gaaaaattctttgcagtcctggtgcgatacgttggtcagaggaaggcacaagtgtacaga
gaaatggcggttgctattctctcacacctggcacagggagaccccactgcagcacgtgcc
atcgccttgcagaaggctagcgtgggtaacctggtaaccttcttggaggacggcgtcagt
atggcgcagtatcaacagaaccctcacaatttgctgcacatgggacaccctccaatggac
cctccaagtgtaaacatgatgtgccgagcagctaaaggactcttggccatggctaaagtg
gaggagaacaagaaagagtttgtactgtatgaaagcagattattagacatctccatttcc
tcagtgctcaatacgggggtggttgccatcgtttgccaagttctctttcacttagggaaa
ttatga
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integrated database retrieval system
