Xiphophorus couchianus (Monterrey platyfish): 114134594
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Entry
114134594 CDS
T05908
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04140
Autophagy - animal
xco04142
Lysosome biogenesis
xco04145
Phagocytosis
xco04148
Efferocytosis
xco05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
114134594 (vps39)
04142 Lysosome biogenesis
114134594 (vps39)
04140 Autophagy - animal
114134594 (vps39)
04148 Efferocytosis
114134594 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
114134594 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114134594 (vps39)
Membrane trafficking [BR:
xco04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
114134594 (vps39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
VPS18_solenoid_2nd
Clathrin
Beta-prop_RIG_2nd
WD40_like
Motif
Other DBs
NCBI-GeneID:
114134594
NCBI-ProteinID:
XP_027857099
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All DBs
Position
19:2348861..2370647
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AA seq
876 aa
AA seq
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MHDAYEPVPILQKLPLQIDCLAAWEDWLLVGTKPGHLLLYRIKKDAATNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQQTSSGE
ESLRMCVAVKRKLQLYYWKDREFHELQGDLGVPDVPKSMAWCENSICVGFKRDYYLIRLD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTLEPRLLVQNVELQRPRFITSAGPNIVYVASNHFVWRLVPVSI
ASQIQQLLQDKQFELALQLAKMKDDSDGEKKQQIHHIQNLYAFNLFCQKKFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPSLSGAELEKAHLALIDYLTQKRSHLVKQL
NDTSPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKSQKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGSENLG
IILEFSPWVLKICPEDGLKIFTEDLPEVETLPRDKVLQFLKEGFVELAVPYLEHIIYVWD
EKGPEFHNVLIQLYLSRVQGLMKQYLNSLPEGVSAVPAGQEQGELGEFRNKLLSFLDIST
SYEPARLISDFPFDGLLEERALLLGRMGKHEQALFIYVHVLSDTRMAEEYCHRHYNSSVE
GNKDVYLSLLRMYLSPPDAHCLGPIKMELTEPQANLQAALHVLELHHSKLNTTKAMNLLP
ANTQIQEIKVFLESVLEEKAQMKRCNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCRDRSVCPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcgtatgagccagtgcctattttacagaagcttcctcttcagatcgactgt
cttgcggcttgggaggattggctgcttgttggaacaaaaccagggcatcttctcctgtac
agaatcaagaaggatgcagccaccaaccggtttgaggtgactttggaaaagtctaataag
aacttctccaagaaaattcaacagctatacgtcgtctctcagtataaaattctcgtcagt
cttttggagaacaacatccacgtccatgacctcctgacctttcagcagatcactgtggtg
tctaaagccaaaggagccacgctgtttgcatgtgacctgcagcaaacgagctccggagag
gaaagcctcagaatgtgtgtggcagtgaaaaggaaactccagctgtattactggaaagat
agagagttccatgagctgcagggcgacttgggtgtgccagatgttcctaaatccatggct
tggtgtgaaaactccatctgtgtcggcttcaaacgggactattacctcattcggctggat
ggccgtggctccattaaggagctcttccccactgggaaacagttggagcctctagttgcc
ccgctggctgatgggaaggtggctgttgggcaggacgacctcaccgtggtgcttaacgaa
gagggagtttgcacccagaagtgcgccctgaactggaccgatatccctatcgccatggag
caccagcctccctacatcattgcggtcctccctcggtacgtggagatacggaccttagag
ccacggctgctggtgcagaatgtggagctgcagaggccgcgcttcatcacctcagcaggg
ccaaacatcgtgtacgtcgccagcaaccacttcgtctggcgccttgtgccggtgtcgata
gccagccagatccagcagcttctccaggacaagcagttcgagctcgctcttcagctggcg
aaaatgaaggacgattcagatggtgaaaagaagcagcagatacatcacattcagaatctt
tacgccttcaacctgttttgccagaagaagtttgatgactccatgcaggtgtttgctaaa
cttggtacagatcccacgcatgtgatcggactttacccggacctgctcccatcagactac
cgcaaacagctgcattaccccaaccctctgcccagcttgtctggggccgaactggagaaa
gctcatctggctcttattgattacctcacccagaaacgcagccatcttgtcaaacagctg
aatgacaccagcccgtccacaacgtctccactcatggagggaacgccgactattaagagc
cgcaaaaaactcctgcagatcatcgacaccacgttgctcaaatgttatctgcacaccaat
gtggccctcgtctctcccctccttcgactggagaacaaccactgccacattgaggagagc
gagtacgttctgaagaagtctcagaagtacagcgagctcatcattctctacgaaaagaag
ggcttgcaccagaaagccttgcaggtcctgctggaccaatccaccaaggccaactctcct
ctgaaaggtcatgagcgaaccgtccagtacctccaacgactgggatcagagaatctgggg
ataatcttggagttttctccctgggtgcttaaaatctgtcctgaggatggcctgaagatc
ttcactgaagatctgcccgaggtggagactttgcccagagacaaagtgctgcagttcctg
aaggaaggcttcgtggagctggccgtcccgtatttggagcacatcatttatgtgtgggac
gagaagggccccgagtttcacaacgtgcttattcagctgtatctgagcagggtccaaggc
ctgatgaagcagtacctcaactcgctgccagaaggggtttctgccgttcctgccggccag
gagcaaggtgaactgggagagttcaggaacaagctgctgtcttttctggatatttccacc
agctatgaacctgccagactcatcagcgacttcccatttgatgggctgctggaggaacgg
gctctgctcctgggtcgcatgggaaaacacgagcaggcgcttttcatatacgttcatgtt
ctgagcgacacccgcatggccgaagaatactgccaccggcattataacagttcagtggaa
ggaaataaagatgtttatctgtctctgctgcggatgtacctgtccccccctgacgcccac
tgcctggggcccattaagatggagctcactgagcctcaggccaacctgcaggcggccctg
catgtcctggagctgcaccacagcaagctcaacaccaccaaggctatgaatctgctccca
gcaaacactcagatccaggagataaaggtcttcctggagagcgtcctggaggagaaggcc
caaatgaaacgctgcaaccaggtgttgaagagtctgctgcaggccgagttcctcagggtg
caggaagaacgaatcttccaccagcaggttaaatgcgtcataacagaagaaaaaacctgc
agagtctgtaagaagaagataggaaacagtgcgtttgccaggtatcccaacggcgtggtg
gttcactatttctgctgcagagatcgcagcgtgtgtcccactgagcagtaa
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