Xiphophorus couchianus (Monterrey platyfish): 114135212
Help
Entry
114135212 CDS
T05908
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114135212
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114135212
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
114135212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
114135212
NCBI-ProteinID:
XP_027858089
LinkDB
All DBs
Position
2:25574479..25633930
Genome browser
AA seq
763 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGKELSKSSHDETVEAFRAARDPVVVQVIRRTPSGR
PHGPPQEIHVVDVCTQTDITFEHIMALAKLRPSTPPVPDVCPFLLSDSCHSLHTMDQDYY
EGTDYLSPVPADGDRMEEFEYEEVELCRLSCHEKLGLTLCYRTDEEEDVAIYVSEVSPNG
IAARDGRIREGDRILQINGNDVQDREEAMAALSSDDFKNIVLLVARPEMQLEEAWLDDEH
SEFLEQLKMEMLEEQRREEMELAALQEEQEKQQRSEDDKPSCSTFSYSRDSLQSLKETKE
NSDHNVLAQIQRRLSRCLRDSQDSHCTSGSKRLEDKDDEDNDESEGDRFQQLLELKCQIR
NSGEYDLFYSRRSTIECSMAEQSDVQHELRMLNEELRSIELECQNIMQAHKLRKSQQSPL
MGRSAPSIKSQRPKHGESVKGKLGDINERMEKSDKDSSSAYNTAESSRSTPLAMDRSPEH
SLQRMVSLTNQRNLYGGFAAGHSPSPSPLPTCRTPVLGKSSSPDHSNPSESDQTPQAEEE
GKRKLKQCTSRIPYFSPSHTSQQRQANIPAHARHYQSYMQLIQQRSAVEYAQSQLSLLSV
CKEPQRPINEPKMEWKVKIRSDGTRYITKRPVRDKILRERALKIKEERSGGMTTDDDAMS
EMKMGRYWSKEERKQHLVRAKEQRRRREFMQRSRLESLKENPQSSSEGRKEVSIIELSHK
KMLKKRNKKILDNWMTIQELMTHGTKAPEGAKVHNAFLSVTTV
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgcactttacagaagcgagaggaacactacaagctgctgtatgag
attgcacaggtgaatgggaaggagttgtccaaatccagccacgatgagactgtggaggcc
ttccgagctgcgagggaccccgtcgtggtgcaggtcatcaggcgtaccccgagcggccgc
ccccacggcccccctcaggaaatccatgtggtggatgtgtgcactcagaccgacatcacc
tttgaacacatcatggcgctggcaaagctccggccttcaacccctcctgtgcctgacgtc
tgtcccttcctgctctctgacagctgtcattcccttcatacaatggaccaagattactac
gaaggtaccgactacctctcccccgtcccagctgacggagacagaatggaggagtttgag
tacgaggaagtcgaactttgtcgtctcagctgtcatgaaaaactaggcctcactctgtgc
tatcgaacggatgaagaagaggatgtggccatctatgtcagtgaggtcagtccgaacggc
attgccgccagagacggacggatccgagaaggggaccgaatcttacagataaacggcaat
gatgtgcaagacagagaagaagcaatggctgctctctccagtgatgacttcaagaacatc
gtactactggtcgcccgacctgagatgcagctggaagaggcttggctggatgatgagcat
agtgagttcctggagcagctgaagatggaaatgttggaggagcagcggagagaggagatg
gaattagctgcattacaagaagaacaggaaaagcagcagagatccgaagatgacaagcct
tcctgttcaacattttcttactcaagagacagcctgcaaagtctgaaagagacaaaggaa
aactcagaccacaacgtcttagcccaaatccagagacgcctgtcccggtgcctacgggac
agtcaggactcccattgtaccagtggtagcaagcgactggaggacaaagacgatgaggac
aatgatgagtcagagggagatcgtttccagcaacttttggagctaaaatgtcagatacgc
aacagtggcgagtacgaccttttctacagccgccgcagtactattgagtgcagcatggca
gaacagagcgatgtgcaacatgagctgcgtatgctaaatgaggagctacgcagtattgaa
cttgagtgtcagaacattatgcaggcccataagctgcgcaagagtcagcaatctccctta
atgggacgttctgcaccctccatcaaaagtcaacgccccaaacatggagagtctgttaag
gggaagctgggggacattaatgagaggatggaaaagtctgacaaggacagctccagtgcc
tacaacactgccgagagttctcggagcacacccttggcaatggaccgctccccagagcac
tctctccagagaatggtcagtctcaccaaccagaggaacctctatggcggctttgctgcc
ggtcactcaccgagcccaagccccttaccgacctgcagaacccccgttctgggcaaaagc
agcagccccgaccacagtaacccttcagagtcagatcagacacctcaggctgaggaggag
ggtaaaagaaagttaaaacaatgcacttcccggattccttacttctctccttcccacaca
tcccagcagaggcaggccaacattccagcccatgcccgtcactaccagagctacatgcag
ctgatccagcagcgttcagctgttgagtacgctcagagccagctcagcctgcttagtgtc
tgcaaagagcctcagagacccattaatgaacccaagatggagtggaaagttaagatccgc
agcgatggcacccgctacatcaccaagaggcctgtgagagacaagatcctgagggagcgg
gccttgaagattaaagaggaacgcagtggggggatgacgacggatgacgatgcaatgagt
gagatgaagatggggaggtactggagtaaagaggaaaggaaacagcacctggtcagggca
aaagaacagaggagaagacgagaattcatgcagcgtagtcggctggaaagcttgaaggag
aaccctcagagcagcagcgaaggtcgaaaggaagtcagtattatagagctcagccacaag
aagatgctgaagaaacgcaataagaagattttggacaattggatgaccatccaggagctg
atgacacacggcactaaggcccccgagggagcaaaggtgcataatgccttcctctcagtc
actactgtatag
DBGET
integrated database retrieval system
