Xiphophorus couchianus (Monterrey platyfish): 114135225
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Entry
114135225 CDS
T05908
Symbol
crocc
Name
(RefSeq) rootletin isoform X1
KO
K16469
rootletin
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xco03037
]
114135225 (crocc)
Cilium and associated proteins [BR:
xco03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
114135225 (crocc)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rootletin
CCDC39
FKBP15
Rod_CreS
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
114135225
NCBI-ProteinID:
XP_027858119
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All DBs
Position
20:16331649..16365288
Genome browser
AA seq
2010 aa
AA seq
DB search
MSGEENSDSNKLESVIQRLEESVLSEEKRLTVRGPSPDAAPTCLPARVREIVTKNLNDTT
GAMSSVMSVQEENRVLQGELARLEDLLAHSRADRDELAIKYGAISERLEQALRFETGEGD
LDSPESRSLAQQNVDLRRRLDEEQAAYRRKLTAYQEGQQRQAQLVQKLQAKVLQYKKKCG
DLEQMLQEKSSELEKGTMGSNSETSNGRHQEDASSNLEDALIRLEEEQQRSSSLSAVNAM
LREQLEQAGLANEALSQDIRRLTVDWTKAREELEQKESDWRREEESFHSYFSSEHGRLLK
MWRQVVGFRRHVCEMKSATERDLSEMRSELTRMSHSARVSCSGLSTSVDSRAAGEKALRV
QLEQQLRERAAEMMSLQSRADAEKSELNVRLSDVVRECERLKGQIVERDEEISSLTKRLE
EQSGSDEPDTQLIKAQSEMLLETLRDIAQSVLSDGESSSEADQDRSAAPLLALIRDSSPR
RSSSPLKMAAAPPASSPSPLPDAALSALRSAVANKTLQLQDVRGRLLSAQSSVQQLRKQL
SDSDTSRRDSEQRNQALQRERDAAQRERETAQKEKYHLKQDRDALASEKAKLEQSVQAAQ
SSVQMLQMEGEKLQLALLAAQRERDGEKEEKEAAAQERDRAKAETQRIQKQRDVSESRAS
AQRGELSAVRESHQQGEVERQLLQLEKAQLSEALARAESCSTELSLQLSRLQSEEAALRD
SLAKMGSMNEALAQDKVDLNNYILQLEEEKRVLLAQRREAEQERLTIRDELVRLEQDRLE
LDAGRVALQQALQDAEQSRAGPESELQSLRAERLRLQQKVTQLCAEVGSLGSELNQALGE
GQKNEAALEEAGRGRAELARDKAALVVQLTASERENAALSEELAAFRSERESLETGLFEA
QQQLAQVESRRDQLEVESQTLSVRCETAAAELKRLRSDGEIALAQGEREKQTLTQALSAA
QLEAQQALRKAVSEHQEEVERLVSEKEAVCRSLQTEHEAALRRCRQEMDDQQQRAKRDRE
ELQEELRALQLDRDQSLLQAETEKQQALSLKEAEKAVLCDRVSSLQAELSAAALEAERTA
REAAQLKEQEEIRVGALTSEMLELRSRLDEATSAHQRELHGLQELCTDLSSRADVALKEL
EQCRASLSAAEESRDQGRRSLLEAERRLSQTQEASENCRRDATELRRSLSDVTKERDALS
QSNAQLRGALRSAETERISVKRQCEEKEQRLAVLEENLLSSQKEVTELRSCLREVERSRL
EARRELQELRRQLKVVDAEKEQRGREVEELQTRLVLEEQREEERGKEVFSLKQKLTEAET
TRESIKKELALTQRRLTESESGWRSCERELTAQLQDARGCEKKLQDEAKNLSLRAQAAHD
AAALSGLQLSEAQGRLTATEAELTRAEAARRDLEFRLSGLQSALTRTLGIGASGRGCRGR
SPGSSSTSPASVSRHHSISPLRSSLSPPKAEFRGSTPDNTLGSGAVSPERGDTPLPQSEL
DPDSLRSGLRDFLQELRDAQRERDDARCQLGVLQRELEELKGERSSAQSRFSLLQSSLQE
LQEVKRGLDERLTTTQILLQQQEEAVRRGDRERRALSDRVKELERSLQSSEADKKHTQDQ
LNKQRAAEVRLEAERKRLREALEAAEARATRVELGRRSLDGELQRLKLSVGDREAESQAS
QQRHDALIKQVAEREARVSQLQRDVDRLSQNLLKAQEGESALKEKVASLSQTLQEVTASH
SSTQSRLLALQKTLGSAEQDKRLLQERLDEARAALAEGKRNMAALTERVQNLQSELSQSE
LRREELEAELSSTQEALRQRSASLVEAQRCAQLVQTERAVVEERLRALQRAVALLETEKK
DSERQAVRLEKDKNALRNTLDKVERQKLKSEEGSMRLSAERSRLDRSLNTAEQELQEAQQ
QILMLQTQLADMEHSHSLCESLVQQRDEVQREAEKMRSSLRDVERTLGTRERAHRHRVKG
LEEQVSTLKEQLQQEIKRRQPSLPASLLSK
NT seq
6033 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtgaggaaaactccgactccaacaagctggagtcggtgatccagcggctggag
gagagcgtcctgtctgaggagaagaggctgaccgtccggggcccgtcaccggatgcggcc
cctacatgtctgccggccagagtccgagagatcgtcaccaagaacctcaacgataccacc
ggggccatgtcctccgtcatgtccgtccaggaggagaaccgggttctgcagggagagctg
gcccggctggaggacctgctggcccacagcagagccgaccgggacgagctcgccatcaag
tacggcgccatcagcgagaggctggagcaggcgctgcggtttgaaaccggggagggcgac
ctcgactccccagagtcgcgcagcctggcccagcagaacgtggatctgcggcgacggctg
gacgaggagcaggcggcctacaggcgtaaactcaccgcctaccaggagggccagcagagg
caggcgcagctggtgcagaagctgcaggcgaaggttctgcagtacaaaaagaaatgtggc
gatctggagcagatgcttcaggagaaatcctccgagctggagaaaggcaccatggggagc
aacagcgaaacgtcaaacggacgacatcaggaggacgcgagcagcaacctggaggacgct
ttgatccgactggaggaagagcagcagaggagcagcagcctgtctgcggtgaacgcgatg
ctgcgggagcagttggagcaggcgggtttggccaacgaggctctgagccaggacatccgc
aggctcaccgtggactggaccaaagcccgggaggagctggagcagaaggagtcggactgg
aggagagaggaggagtctttccacagctacttcagcagcgaacacggccgactgctgaag
atgtggagacaagtggtcggcttcaggaggcacgtctgcgagatgaagagcgccaccgaa
agagacttgtcagaaatgcgctctgagttgacccggatgtcccactcggcccgggtgtcc
tgctctggcttgtccacgtcagtggacagtcgggcggcgggagaaaaggctctgagggtt
cagctggagcagcagctgagggagcgagcggcggagatgatgagccttcagagcagagcc
gatgcagagaaaagtgagctcaacgtcaggttgtctgacgtggtgcgagaatgtgagaga
ctgaagggacaaattgtggaacgagacgaagaaatctcctctctgacgaagaggctcgag
gagcaaagtggcagcgatgagcccgacacgcagctgattaaagctcagtctgagatgctg
ctggagacgctgagagacatcgctcagagcgtgttgtcagacggggagtcgtcgtcagaa
gccgaccaggatcgctctgcggctccgctgctggcgctgatccgtgactcctctcctcga
cggtcctcctctccgttaaagatggcggccgctcctccggcctcctcgccgtctcctctg
cctgacgctgctctgtccgctctccgctcagcagtcgcaaacaagaccctgcagctgcag
gacgtccgcggccgtctgctctctgcccagtcgtccgtccagcagcttcgaaagcagctt
tcagactccgatacgtccagacgagactcggagcagcgaaaccaagcgctgcagcgagaa
agagacgcagctcagagagagagagagaccgcccagaaagagaagtaccatctgaagcag
gacagggacgcgctggccagcgagaaggcgaagctggagcagagcgtccaggcggcgcag
agcagcgtccagatgctgcagatggaaggcgagaagctgcagctggcgctgctggcggct
cagcgagagcgagacggcgagaaggaggagaaggaggcggccgctcaggagagagaccgg
gccaaagccgagacccagaggatacagaagcagcgggatgtgagtgagagccgagcatcg
gctcagagaggagagctgtctgcagtgagggagagccaccagcagggggaggtagagagg
cagcttctgcagcttgagaaggcccagctgtctgaggcactggctcgggccgagagctgc
agcacggagctgtcactgcagctcagcaggctgcagtctgaggaggcagcgctcagagac
tctctggcaaagatgggcagcatgaacgaggcgctggcccaggacaaggtggacctcaac
aactacatcctccagctggaggaggagaagcgcgtcctgctggctcagcggcgtgaggcg
gagcaggagcggctgaccatcagggacgagctggtccgtctggagcaggaccggctggag
ctggacgccggccgcgtggcgctgcagcaggcgctgcaggacgccgagcagagccgggcc
gggccggagagcgagctgcaaagtctcagagcggagaggctgcggctgcagcagaaggtg
acccagctttgtgccgaggttggttctctgggctctgagctgaaccaggccctgggggag
ggccagaagaacgaggcggcgctggaggaggcgggccgcggtcgggcggagctggcccgg
gacaaagcggctctggtggtccagctgacggcgtctgagagagaaaacgcggcgctgtca
gaggaactggctgctttcaggtctgagcgggaatccctggaaacgggtctgtttgaggcg
cagcagcagctggcgcaggtcgagtcccgcagagatcagctggaggtcgagagccaaacg
ctgagcgtccgctgcgagacggctgcagctgagctgaagcggttgcgctcagatggtgag
atcgccctggcgcagggagagagagagaaacagactctgactcaggccctcagcgctgcg
cagctggaggctcagcaggcgttacgcaaggccgtctctgagcatcaggaggaggtggag
aggctggtctcagagaaggaagcggtgtgtcgcagcctgcagacggagcatgaagcagct
ctgaggcggtgcaggcaggagatggacgaccagcagcagagagcgaagagagacagagag
gagctgcaggaggagctgagggctctgcagctcgaccgagaccagagtctgctgcaggcc
gagacggagaaacagcaggcgctctcgctgaaggaggcggagaaggcggtgttgtgtgac
agagtgtccagtctgcaggcggagctgtcggctgcagctctggaggccgagcggacggcc
agagaagcagctcaactcaaagagcaggaggagattagagttggagctctgaccagtgag
atgttggagcttcgctctcggctggacgaagcgacatcggctcatcaaagggaactccac
ggtctgcaggaactctgcactgatctgagctcgcgagccgacgtcgctctcaaagagttg
gagcagtgcagggcatccctgtcagcggcggaggagagccgagaccaggggaggcggagc
ctgctggaggccgaacgccgtctgagccagactcaggaggcgtcggagaactgcaggagg
gatgcgacggagctgcggcgcagcctcagcgacgtcacgaaggagagggacgctctgagc
cagtccaacgctcagctgagaggagcgctgcgcagcgcggagacggagaggatcagtgtg
aagcgacagtgtgaggagaaggagcagaggctggctgtgctggaggagaacctgttgtcg
tctcagaaggaagtgaccgagctgcgcagctgtctgagagaggtcgaaaggtcacgcctg
gaggctcggcgggagctgcaggagctccgcagacagttgaaggttgtggatgcagagaag
gagcagagaggaagggaagtggaagagctgcagactcgtctggttctggaggagcaaaga
gaggaggagcgagggaaggaggtcttctccctaaagcagaagctcactgaagctgaaaca
accagagagtccatcaagaaggagctcgccctgacccagagacgtctgacagagtccgag
tccggctggcgcagctgtgagagagagctaacggctcagctgcaggacgcccgcggctgc
gagaagaagctccaggacgaagccaagaacctgtcgctgcgcgctcaggccgcccacgat
gccgccgctctgtccggcctgcagctgagcgaggcgcagggccggctgaccgccactgaa
gccgagctcacccgggccgaggccgccaggagggatctggagtttcggctgagcggtctc
cagtctgccctgacccggacgctgggcatcggggccagcggtagaggctgcagggggcgg
agccccggcagcagctccacgtcaccggccagcgtgtcacgccaccacagcatctcgccg
ctgcgctcctcactgtcgccacctaaagcagagtttcgaggaagcacgccggacaacacg
ttgggttctggtgccgtttctccagagagaggcgacacgccgctgcctcagtctgaactc
gacccagattcactgagaagtggcctcagagatttcctccaggagctgcgagatgcacaa
agagaaagggatgatgctcgctgccagctgggggtcctgcagcgggagctggaggagctg
aagggggaacgcagctctgctcagagtcgcttctctctgctgcagagctctttgcaggag
ctgcaagaagtgaagcgtgggctggatgagcgtctgaccaccactcagatcctgctgcag
cagcaggaggaggcggtgaggagaggagacagagaaaggagagctctctccgaccgggtg
aaggagttggagcgatcgctgcagtcctcagaggcggataagaagcacacccaggatcag
ctgaacaagcagcgggccgctgaggtgcgtctggaggcggagaggaagcgcctgcgggag
gcgctagaggcagccgaggctcgggccaccagggtggagctggggaggcgaagcctggac
ggggagctacagagactgaagctgagtgtgggggaccgtgaggccgagagccaggcgtcc
cagcagcgccacgacgctctgatcaaacaggttgcagagagagaagctcgtgtttcccag
ctgcagagggacgttgacaggctgagtcagaacctgctgaaagctcaggaaggcgaatct
gctcttaaggaaaaggtcgcctccctcagccagaccctccaggaggtgacggcctcccac
agcagcacgcagagccgtctgctcgccctgcagaagacgctcggttcggctgagcaggac
aagaggctcctgcaggagcgactggatgaagcacgggcagctctggctgaagggaagaga
aacatggctgcccttactgagcgcgtgcagaacctgcagagtgagctgagccagagcgag
ctgcggcgagaagagctggaggccgagctcagcagcactcaggaggctctgcgtcagcga
tcggccagccttgtggaggctcagcggtgcgcccagctggtccagacggagcgggccgtc
gtagaggagcggctgcgcgcgctgcagagagcggtggctctgctggagacggagaagaag
gattcagagaggcaggcggtgaggctggagaaagacaagaacgcactgaggaacacgctg
gataaggtcgaacgtcaaaagctgaagtccgaggagggcagcatgcggctttctgctgag
aggagccgtctggatcgctcgctgaacacggcagagcaggaacttcaggaggcgcagcag
caaatactgatgcttcagactcagctggctgacatggagcactcacacagtctgtgtgag
agtttggtgcagcagcgtgacgaggtccagcgggaggctgagaagatgaggagcagtctc
cgggacgtggagcggacgctgggcaccagggagcgagctcaccgccaccgggtcaaaggc
ctggaggagcaggtttccactctgaaggagcagctgcagcaggagattaagcgacggcag
ccgtctctcccagcatcgctgctgtccaaatga
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