Xiphophorus couchianus (Monterrey platyfish): 114135269
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Entry
114135269 CDS
T05908
Name
(RefSeq) laminin subunit beta-4-like
KO
K06245
laminin, beta 4
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04510
Focal adhesion
xco04512
ECM-receptor interaction
xco04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114135269
04518 Integrin signaling
114135269
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114135269
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Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
LAMB1
LAMININ_IV_B
LAMB4
ATG17_like
DUF7630
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
114135269
NCBI-ProteinID:
XP_027858192
LinkDB
All DBs
Position
2:complement(24088280..24115923)
Genome browser
AA seq
1780 aa
AA seq
DB search
MILIFIFVCLPAVKPQDLQDQCPGGSCHPQLGDLMVGRGAQLSASSTCGVDGPQNYCIVG
YLEGEKKCFTCDSRLPFSPQGNPQSHRIENVITTFDSDRRLKWWQSENGVHQVSIQLDLE
TVFQFSHLVLTFKSFRPAAMLVERSKDFGRSWKVFRYFADDCSLHFPSVPAEPASFIDDV
VCDRRYSGPEPSAGGEVVLKALDPVFEIDDPYAPNIQELITLTNIRVNFTRLFTLGDTLL
ARRRRDPQEKYYYSLYSMVVQGSCFCNGHASRCVPVDGGRGDVFTQSDMVHGRCVCQHNT
AGENCERCQPFHNDSPWKPGGETTPNICRRCNCHGHSDSCHFDAARYEETGGASGGVCDD
CRHDRTGPQCERCRPFLYQDPQRALEDPHACIPCDCDPAGSHSGGLCDASSGRCLCKENV
EGQRCDRCKHGFFNLRSDNPVGCEVCRCHGLGSVGPCDPLTGSCKCEPMATGLLCDHCVA
GFWGLGNSVFKCSPCDCDVGGASSNMCSSENGQCSCLPNMVGRRCSDSAPGYFLPSLIYF
LYEAELAAQLTGGSSSPTPPAPLPVFPSSSPLVNPALLPSCEQYFRRQGYDFRISNGKVI
LIRRPRHLTRRRRRQNTNPLNRGPLQILPHQGSPEQSGTGLGLVRVTEGVGLRFTVDNLP
TSMEYQLVIRYESESVTDWVARVNIITLSPGDGGCSDDPPSGSLTLILPRSSRLSILDSR
VCLNARGRYYVEIFFDRQQRSDYAPLLVDSMGLVQSFYSVQDFCSQSDFDSFSHFRCVGL
DVYLGSQESLPKICEGLIKSLSARIHNGAVACTCNVIGSLGSGCSTLGGLCDCKPSVIGR
CCDACAPLTFGFGPEGCKRCECDPQGSLSEACDPSGGQCTCRPRVSGRRCDQCESGFWRF
PLCQPCDCNGLSETCDGWTGQCVNCREHSSGSHCDRCVEGYYGNPVSRQPCQPCLCPDIL
SSGRFFASSCRYDPQSVRVSCSCREGHTGERCDRCSSGFYGDLRLPGAVCRACSCNNNID
PDDSDACDGTTGECLRCLHYTTGPRCQFCKPGYYGNALQHNCKECSCDRRGTKATLCPLE
SPCFCNRETGQCPCRTGVVGNLCDKCEDGFWNLDGASGCQPCSCDPSNSVSNICDKVSGQ
CPCRPEFGGRQCDECGENYFGNPDLQCFSCDCNLEGTQRPSCDPETGECICRTGVTGILC
DECTPGYSSEFPACEKCHECMVLWSENVTDIQRAAQRMRTFILLHGNTQHSTHSQYWQRM
LEIHSRLDSFGNMTGFSLPKLEKVEKLYMKIRKMKDAVDTNIILIDPSVLLNNEINNINV
EFQKMLKNLKDKLIKDPNKKETQPVEEMLQEIQKLHKTFMSDEKRVRNSNKAVEDSMDTR
WETKRKLSMWSGREDLATLEKKVKELNMRQLNQKVCGQPDPEDCSGCPGGQICDGAVPHA
QKASETAEKVKEQLIKFPSSLDESKKKISDVQQVAQDTKDQAQDLQRQISDITKSVEREK
NKTRELIQRVKQYLMDEMVPPGDIEKMANAVLRIQLPRSPAEIQSMINEINKLLNNKFQE
DLKKLQDEAKTAQELLQKATDVKEQTKNINVKDILSDIIAADTAQSKANDDLEVANKDRD
DANDRIQEMENKLNNIEDKLMNQSVGLLEESEALKNKTEQNREMAKEARETAESALTNIS
NDRELQGVQEQFELLNQKHLNKTLEDEAADRLQKILKEIEDMQRQMEDRLQQIEDVEQKI
QLLIQRKEEKIVEVADLLNTVESLQKEINSKAQYYVTCSS
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgatcctcatctttatttttgtttgtctcccggctgtaaaaccccaggacctccaggac
cagtgccctggcggctcctgtcaccctcagcttggtgacctgatggtgggacggggagcg
cagctctcagcctcgtccacctgcggtgtggacggaccccagaactactgcatcgttgga
tacctggagggggagaaaaaatgtttcacatgtgactcccgactgccgtttagtccccaa
ggcaacccacagagccatcgtatcgagaacgtcatcacaacgtttgactccgacagacga
ctgaagtggtggcagtctgagaacggagttcatcaagtcagcatccagttggacctggag
actgtcttccagttcagccacctggtcctcaccttcaagagcttcaggcctgcagccatg
ctggtggagcgttcgaaggattttggacgaagctggaaagtttttcgctactttgcagac
gattgttcccttcattttccttcagttcctgcagaacctgccagcttcattgacgatgtt
gtctgtgacagaagatactctggaccagaaccatccgcaggtggagaggtggtgctaaaa
gctctggatcctgtctttgaaatagatgacccatatgctccaaacattcaagagctgatc
accttgacgaatatccgtgtgaacttcactcgtctcttcacgcttggtgacacgctgctg
gctcgcagacgcagagatcctcaggagaaatattattactcgctttacagcatggtggtt
cagggaagctgcttctgtaacggacacgccagccgctgtgtccctgtggacggaggacgt
ggggacgtcttcacccagtctgacatggttcacggtcgctgtgtctgtcagcacaacaca
gctggggagaactgtgagagatgtcagccgtttcacaatgactccccctggaagcctgga
ggagaaactacacccaacatctgcaggaggtgtaactgtcacggtcactcagactcatgt
cactttgatgctgctcgctacgaagagaccggaggtgcaagtggcggcgtgtgtgacgac
tgccgccatgacaggacggggcctcagtgcgagcgctgccgacctttcctgtatcaggac
ccgcagagggcgttagaggacccccacgcctgcataccgtgtgactgcgaccccgccggc
tcccacagcggcggtttgtgtgatgcttcaagcggtcgatgtttgtgtaaggaaaacgtg
gagggtcaacgctgtgatcgctgcaaacatggtttcttcaatttgagatcggacaacccg
gttgggtgtgaagtctgcaggtgccacggcttgggaagtgttggaccatgcgatccgctt
acagggagctgtaaatgtgagccaatggccaccgggctgctgtgtgatcattgtgtggca
ggtttctggggtttgggaaactcagtcttcaaatgttcaccctgtgactgtgatgttggc
ggagctagcagcaacatgtgttcttcagagaatggacagtgttcctgtttacccaacatg
gtgggccggcgctgctctgactctgctcctggttacttcctgccctcgctcatctacttc
ctgtatgaggcggaactcgctgcacagctgacaggagggagttcctcccctactcctcct
gctcctcttcctgtttttccctcttcctctccactggtgaatcccgcccttttgccttca
tgtgagcagtatttcagacgtcagggctatgacttccggatctccaatggaaaagtgatt
ttgatacggaggcctcgtcatctcacccgtcggaggagacggcagaataccaaccctttg
aaccgggggcccctgcagatccttccccaccagggctcacctgagcagtcaggaactggt
cttggattggtcagagtgacagagggggtggggcttagattcactgtggacaacctgcca
acatcgatggagtaccagctggtgatccgctatgaatctgagtctgtcaccgattgggtg
gcgagagtgaacatcatcacgctgtcaccaggagatggaggctgcagtgacgaccctcca
tcaggaagtctgacactgatcctccccagaagctccagattaagtattctggattcccgg
gtgtgtctgaacgccagaggtcgatactatgtggagattttctttgacaggcagcaaaga
tcagactacgctcctctgctggtcgactcgatgggattggttcagagtttctattcagtc
caagacttctgctcccagagtgactttgactctttcagtcactttcgctgcgttggattg
gacgtgtatctcggttctcaggagtcacttccaaaaatctgcgaaggactgatcaagagt
ctgtcggcacgcatccacaacggagctgtggcctgcacgtgtaacgttattggttctctt
ggatcgggatgcagtacgctgggcgggttatgtgattgtaagcccagcgtgatcggccgt
tgctgtgacgcttgtgcacctctgacctttgggtttggacctgaaggctgtaaacgatgc
gagtgcgaccctcaaggttctctgtcggaggcgtgtgacccgagcggaggtcagtgtacg
tgtcgcccccgggtatccggtcgacgctgcgatcaatgcgaatctggattctggagattc
ccgctgtgtcagccttgtgactgcaacggcctgtcggaaacctgcgatggatggaccgga
cagtgtgtgaactgcagggagcacagcagcgggtcgcactgtgacaggtgtgtagagggt
tactatggtaacccggtctccaggcaaccctgtcagccctgcctgtgccctgatatcctg
agcagtggacggttcttcgcctcttcctgtcgatacgacccgcagtccgtcagagtgagc
tgctcctgcagggagggacacacaggtgaacgatgtgacaggtgcagttcgggtttctac
ggcgacctgaggttgccaggtgccgtctgcagggcgtgctcctgcaacaacaacatcgac
ccggacgacagcgatgcctgcgacggcacaaccggagaatgtctccgctgccttcactac
acaacgggtccacggtgccagttctgcaagcctggttactatggcaacgccctgcaacac
aactgtaaagaatgctcctgtgatcgccgggggaccaaggcgactctatgtcccctggag
agcccctgcttctgcaacagggagacaggacagtgtccctgcaggacgggtgtggtggga
aatctctgtgataaatgtgaggacgggttctggaacctggacggagcgtcagggtgtcag
ccctgcagctgtgacccgtctaactccgtctctaacatctgcgataaggtgtcgggacag
tgtccctgtcgtcctgagtttggaggaagacagtgtgacgaatgtggagaaaactatttt
gggaatccagacctgcagtgcttttcttgtgactgtaaccttgagggaacgcagcgcccg
tcgtgtgaccctgaaactggtgagtgcatctgtcggactggcgtcaccggtatcctctgt
gacgagtgcactccaggctacagctcagagtttcctgcctgtgagaaatgccatgaatgc
atggttctgtggtccgaaaacgtcactgacatccagcgagccgcccaaaggatgaggacg
ttcatccttctccatggcaacacccagcattccactcacagtcagtactggcaacggatg
ctggagattcactccagactggacagctttggcaacatgactggtttctctctgccaaag
ctggagaaggtagagaaactctacatgaagattaggaagatgaaagatgctgttgacacc
aacataattctgatcgacccgtctgtcctccttaacaatgaaatcaataacattaacgta
gagtttcagaagatgctaaaaaacctgaaggataaactcatcaaggatccaaacaagaaa
gaaactcagccagtggaagagatgctgcaggagatccagaagcttcataaaactttcatg
tcagatgaaaagcgggtgagaaactccaataaagctgtggaggactccatggacaccaga
tgggagactaagcgcaaactgagcatgtggagcggcagagaagatctggcaactctggag
aagaaggtcaaggagctcaacatgcgccaactcaaccaaaaggtctgtgggcaaccggat
ccggaggactgctctggatgtcccggaggtcagatctgtgatggagctgttcctcatgcc
cagaaagcttctgagacggcagagaaagtaaaagagcaactcatcaaattcccatccagc
ctggacgagtcaaagaaaaagatcagtgatgtccagcaagtggctcaggacaccaaagac
caggcccaagacctgcagcgccagatcagcgacatcaccaaatcagtggagagagagaaa
aacaaaaccagagagctcatccagagagtcaaacaatatctgatggatgaaatggttcct
ccaggtgacattgagaaaatggcgaacgctgtcctgaggatccagctgccacgatcacct
gctgagatccaatcgatgatcaatgagatcaataaacttttgaacaacaaattccaggag
gacctgaagaagctgcaggatgaagccaaaacagctcaggaacttctgcagaaagcgaca
gatgtcaaggagcaaactaaaaacatcaacgttaaagacatcctcagtgacattattgct
gcagacacagctcagagcaaagccaacgatgacctggaggttgcaaataaggacagagac
gacgccaatgaccgaatccaagagatggaaaacaaactgaacaacattgaggataagctg
atgaaccagtctgtaggtctgctggaggagagtgaagcgctgaaaaataaaacagagcaa
aacagagaaatggcaaaagaggccagagaaactgctgagtcagcattgaccaacatttct
aatgacagggagctgcaaggagttcaggagcagtttgagcttttaaatcagaagcacttg
aacaaaacacttgaagacgaagccgcagatcgactgcagaaaatcctgaaggagattgaa
gatatgcagagacaaatggaggacagactccaacagatagaagacgtggagcagaagatc
cagctgctgatccagaggaaggaggagaaaatagtcgaggtggccgatctgctgaacacg
gtggagtcacttcaaaaggaaatcaactctaaagctcaatattacgtcacatgttcctca
taa
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