Xiphophorus couchianus (Monterrey platyfish): 114135486
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Entry
114135486 CDS
T05908
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like isoform X1
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
114135486
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xco02000
]
114135486
Transporters [BR:
xco02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
114135486
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GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
114135486
NCBI-ProteinID:
XP_027858606
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Position
20:complement(15105625..15114669)
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AA seq
637 aa
AA seq
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MYLTNKHCVHCVLNDTYLILTKVKMDPKQTSHVKTKPNPGERPFSIEPKTHVRDQWATKM
EFILAVAGHIVGLGNVWRFPYLCYKNGGGVFFIPYVLFLFTCGIPLFFLETSLGQFTSQG
GITCWRNMCPLFEGLGYGSQVVVLYTGVYYIVILAWTFLYLFSSFRTELPWVSCNNSWNT
VACFEHGHNDTSSFHLYANTTSSVVQFWERRILGLSNGIDNIGSVRWDLALCLLLAWVLC
YFYIWNGVKSTGKVVYFTATFPYVMLAVLLVRGLTLPGAKDGILFYLYPDPSRLADPEVW
MDAGSQIFYSYGVCTGVLTSLGSYNKYNNNCYRDCIYLCLLNSLTSFVAGFAIFSVLGFM
AKEQNVEISMVAESGPGLAFIAYPRAVALMPLPQLWAIFFLFMIIFLGLDSQFVYQESLV
TTISDMYPSFFQKTLLRRLLLLTICAGGFLVGLVMVTEGGLYVFQLFDYYACSGMTLLFF
ALLQSICIGWVYGADRHYDNVKDMIGYRPWPFMKYCWRYITPAICTFTFLFSVIKHKPLK
FNNTYEYPWWGYAFGLFFTLSSTLLVPLWMVYAVSITPGTLKQRLKHLCTPAKNVPAGTI
KKASNPEAFQSFTDLSTLRPANHPQETENTVLRSSVV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaactaataaacactgtgtccattgcgtacttaatgatacttatctaatcctg
accaaggttaaaatggacccaaaacaaacctcccatgtgaaaacaaaaccaaaccctggg
gaaagacctttcagcattgagccaaaaactcatgtgagggaccaatgggccacaaagatg
gagttcatcctggcggtggctggacatattgtgggtcttggaaacgtttggagatttccc
tacctttgctacaaaaatggaggaggcgttttcttcattccttatgttttatttctattc
acctgtggcatcccactcttcttccttgagacatctttgggtcaattcaccagccagggt
ggaataacatgttggaggaatatgtgtcctctttttgaaggcctgggttatggaagccaa
gttgttgttttgtacaccggggtgtattacatcgtcattctggcatggacttttctctac
ctgttttcgtccttcagaactgagcttccatgggtgagctgcaataacagttggaataca
gtcgcttgttttgaacatggtcacaatgacacatcctctttccacttgtacgccaacacg
acatcttcagtcgttcagttttgggagaggagaatattggggctgtccaatggaattgat
aacatcggaagtgttcgttgggatctggctctttgtctgctccttgcttgggtgttgtgt
tatttctacatctggaatggagttaaatccacaggaaaggtggtgtatttcacagctaca
tttccgtacgtgatgctggcagtgttgcttgtccgtggactgacattaccaggagcaaaa
gacggcattcttttctacctctaccctgacccgtcccgcctcgctgacccagaggtatgg
atggatgcaggcagccaaattttctactcctatggggtttgcacaggtgttctgacatct
ttgggaagttacaacaaatacaacaacaactgttacagggattgtatttacctatgcctg
ctgaacagtttaaccagctttgtagccggctttgccattttctctgtgctcggttttatg
gcaaaagagcagaatgtggaaatttccatggtggctgaatcaggcccaggcttggcattc
attgcttatcctcgtgctgtagctttaatgcctctgcctcagctttgggcaatatttttc
ctttttatgatcatcttcttgggattagatagtcagtttgtatatcaggagtccttggtt
acaaccatctccgacatgtatccatccttctttcaaaaaacccttctacgtagattgctt
cttctcacaatttgtgctggaggtttcctggttggtcttgtgatggtaacggagggaggc
ctttatgttttccagctgtttgactactatgcttgcagcgggatgacacttctatttttt
gctcttcttcagtctatctgtattggatgggtttatggtgcagatcgtcactatgataat
gtgaaagacatgattggttatcgtccctggcctttcatgaaatactgctggaggtacatc
acaccagctatctgtaccttcacgtttctgttctctgtgatcaaacataaacctttgaaa
ttcaacaacacgtatgaatatccatggtggggatacgcctttggactattcttcactctc
tcttcaacattgcttgttccgctgtggatggtgtatgctgtgagcatcactccaggaaca
ctaaaacagaggctaaaacatctctgcactccagcaaagaatgtaccagctggcacaata
aagaaagcatcaaaccctgaagcatttcagtcattcacagacttgtccacactgcgtcca
gccaatcatccacaggaaacagaaaacacagttctgaggtcatccgtagtttaa
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