Xiphophorus couchianus (Monterrey platyfish): 114135548
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Entry
114135548 CDS
T05908
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc isoform X1
KO
K10357
myosin V
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
114135548 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114135548 (myo5c)
04131 Membrane trafficking [BR:
xco04131
]
114135548 (myo5c)
03029 Mitochondrial biogenesis [BR:
xco03029
]
114135548 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xco04812
]
114135548 (myo5c)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
114135548 (myo5c)
mRNA cycle factors
P-body specific factors
114135548 (myo5c)
Membrane trafficking [BR:
xco04131
]
Others
Actin-binding proteins
Myosins
114135548 (myo5c)
Mitochondrial biogenesis [BR:
xco03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
114135548 (myo5c)
Cytoskeleton proteins [BR:
xco04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
114135548 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
AAA_16
AAA_22
Myosin_N
Motif
Other DBs
NCBI-GeneID:
114135548
NCBI-ProteinID:
XP_027858726
LinkDB
All DBs
Position
2:11098867..11128377
Genome browser
AA seq
1740 aa
AA seq
DB search
MALSELYTKYNRVWIPDEGQVWKSAEITKDFHSGDNVLELLLEDGTVHLHPVDPSKPKLP
PLRNPDILVGENDLTALSYLHEPAVLHNLKVRFVESRIIYTYCGIILVAVNPYKQLPVYG
DAIIHAYSGQNMGDMDPHIFAVAEEAYKQMARNHKNQSIIVSGESGAGKTVSARYAMRYF
AVVSKSGSQTRVEDKVLASNPITEAIGNAKTTRNDNSSRFGKYTEISFDRRYRIIGANMR
TYLLEKSRVVFQAENERNYHIFYQMCSCADSAEFKHLRLLSADEFRYTGMGGDITIDGVY
DKKDFEETRQTFSLLGLKEDFQSDIFKVLAAILHLGNVEIRSSGDDKSSAALSDPHLAAF
CDLLCVSAAELVRWLCNRRIVLVAETVVKPVPKERAAAGRDALAKQIYAHLFDCIITRIN
TALQVPGKQHAFIGVLDIYGFETFDINSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKE
DIPWTLIDFYDNQPVIDLIEAKMGILDLLDEECLFPQGTDQSWLQKLFNYLEANPLFEKP
RLSNEAFVIQHFADKVEYQCRGFLEKNRDALYEELVDTMRASKFSFLAHFFQEEEQSRAA
SKGVKVKSARPSVKPANKQLRTSVGDKFRSSLSLLMGTLNATTPHYVRCIKPNDEKLPFE
YDSGRVVQQLRACGVLETIRISAQSYPSRWTYIEFYSRYSILMSHVEADFNDKKQTCKNV
LQRLIQDPNQYKFGRTKIFFRAGQVAFLEKLRLDRLRAACVTIQKHVRGWSRRRKYLRIR
EAAIILQQYIRGKRTIRKMVTAETLKQGWAAVVIQRHWRGYCMRQIYHVVQMASITIQAF
TRGWMARKRYKMMIEEHKALVLQKYAKAWLARRRFQTMRRLVLNVQLSYRVQQLRKKTEE
QNKENRGLMERLTSLASSHSQTMEKLHSQEAQLEKLTNLKASLEEREKKAREEASMTINQ
LQRQFEELNTEKQNSEKKLEVSIKETKESFDQVKRNLLEEKENEVRLRKIAENNTEIQRH
DHEKELEILKEEIKRLKEDRVSLQRKVEDGAQVNSDLQEQVIQLTKHVKVIPELRRDLNN
LQNQKNNLDRKMKEQSEQTRAKTKEIVRQLLGGFVEEEKLLGLVPEDSEKIYELDDLQEA
FESLQKATRLLENHQKEQRETYKSQMEGLTLRVDHLQNENSKLQNLFQEKSNINEDIRQE
VSRLSSENSVIPELKLQVSELHRQKQELETVVKEQSSELAEKNMEISNILHKKITEESSQ
RRHFEEKARELEEIREELQVKIEELEEENEHLKRQQLMEGEVKRKLREETSQLTAENMDL
EEQLDQKERWIKKLHSQIKCLEMSQKAKQTPALPKEYLGMLEYKREDEARLIQNIITDLK
PKGVVVNVIPTLPAFILFMCVRHADYLNDDNKLKSLMNGIIQGVKKVVVAHHKDFESLSF
WLSNTYRLLNCLKQYSGEEQFLKQSTPRQKKNCLQNFDLSEHRQILSDLAIQIYHQLISI
MQKTLTPAIVPGMLEHESLQGISSMKPTGFRKRSSSLYNDSETYTISSILQELSVFYSAM
SHHGMEQSLTTQAVKQLFFLIGATTFNQIMLRKDMCSCRKGMQIRCNISYLEEWLKENEL
QSCGAIDTLRPLAQAAWLLQVNKSTDEDAKEIAEKCTELNPVQIVKILNSYTPIDDFEKR
VTSSFVRQVQSFLQEYEGATQLMLDTDYRFQVTFPFCPSSTALESLQVPSSLHLEFLTRI
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atggctttatctgagctgtacacaaagtataacagagtgtggataccagatgaaggacaa
gtgtggaaatcggctgaaatcactaaagacttccactcaggcgataatgttcttgaatta
ctcctggaagacggaactgttcacctccacccggttgacccctccaaacccaaactgccg
cctctcagaaacccagacatcttggtaggggagaacgacctcacggctctcagctacctg
cacgaacctgcggtcctgcacaacctcaaagtccgatttgtcgagtccagaatcatctat
acctactgtggtatcattctggtcgccgtaaatccatataaacagcttcctgtctatgga
gacgcaatcattcatgcttattctggccagaacatgggagacatggatcctcatatattt
gctgtggcggaggaggcgtacaaacagatggccaggaatcataaaaaccagtccatcatt
gtgagcggggaatccggagctggaaaaaccgtatcggcgcgttacgctatgaggtacttt
gctgttgtgagcaaatctggaagtcagactcgggttgaagacaaagtgttggcttccaat
ccgatcacagaggcaattggaaatgcaaaaaccacccgaaacgacaacagcagcaggttt
ggaaaatacacagagatcagcttcgacaggaggtatcgcatcatcggagcgaacatgagg
acttacctcttagagaagtccagggtggtttttcaggcagaaaatgagcgtaattaccac
atattctaccagatgtgttcgtgtgcagactctgcagagttcaagcacctgagactgttg
agtgcagatgagttcaggtacaccggcatgggtggcgacataactatagatggtgtgtat
gacaaaaaagactttgaagagactcgacagaccttctcccttctgggtttgaaagaggac
ttccagtcagatatttttaaagttttagctgcaattttgcatttggggaatgtggagatc
agaagctctggggacgacaagtcatcggctgctctgagcgatccacacctggcggcgttc
tgcgacttgctgtgtgtgagcgcggctgagctggtgcgatggctgtgtaatcgccggatc
gttctggtggctgaaacggtcgtgaagccggttcctaaagagcgagcggcggccggcaga
gacgctctggctaagcagatctacgcacacctgtttgactgcatcatcaccaggatcaac
acggcgctgcaagttcctggaaaacaacacgctttcatcggcgttctggacatctacgga
tttgaaacatttgacatcaacagctttgagcagttttgtatcaactatgcaaatgaaaag
ctccagcagcagtttaacttgcatgtgttcaaactggagcaggaggagtacatgaaggag
gacatcccttggactctgatagacttttatgataatcagcctgttattgacctgatcgaa
gcaaagatggggatcctcgacttgcttgatgaagaatgcttatttccccaaggaacagac
cagagctggctgcagaagctgttcaactaccttgaagccaatcctttgtttgagaagccc
aggttatcaaatgaggcatttgtgattcaacactttgcagacaaggtggaatatcagtgc
cgaggttttcttgagaagaatcgagatgctctttatgaagagctggtggacacgatgaga
gccagtaagttttcctttctggcacattttttccaagaggaggagcagagcagagcggcc
agtaaaggcgtcaaagttaaatcagccaggccttctgtgaaaccagccaataagcagctg
aggacttcagtgggagataagtttcgcagctccttgtctttactgatgggaacgctgaac
gccaccacccctcactatgtgcgctgcataaagccaaacgatgaaaaactcccatttgaa
tatgactcggggcgggtggtgcagcagctgcgggcctgcggagtgcttgaaactattcgg
atcagtgcacagagctacccgtccaggtggacgtacattgagttttacagccgatacagc
atcctgatgtcacatgtggaggcagatttcaacgacaagaaacaaacctgcaaaaacgtc
ctgcagagattgattcaggaccccaaccagtacaagtttggccgtacaaagatcttcttt
cgcgctggacaggtagcttttctggagaagctgcgtctggatcgactgagagcagcctgc
gtgacgattcagaaacacgtccgtggatggagccgcaggaggaaatacctgaggatacga
gaggcggccatcatcctccagcagtacatccgagggaagaggacgatccgtaaaatggtg
accgctgaaacactgaagcagggctgggctgctgtggtgatccagagacactggagaggt
tactgcatgagacagatctaccatgtcgtccaaatggcctccatcaccatccaagccttc
accagaggatggatggccagaaaacgctacaagatgatgattgaggagcacaaagctctg
gttctgcagaaatatgccaaagcatggctggcccggcggcgttttcaaaccatgcgccgc
cttgtgcttaatgtgcagctctcctaccgggtgcagcagctcaggaagaagactgaagag
cagaacaaagagaatcgaggattaatggagagactgacgagtctggccagcagtcattcc
caaacgatggaaaaactccacagtcaggaggcgcaactggaaaaactaacaaacctgaag
gcatctctggaggaaagagaaaagaaagcaagagaagaggctagcatgacaattaatcag
cttcaaagacaatttgaagaactaaacactgaaaagcagaactcggagaaaaagcttgaa
gtttccatcaaagagacaaaagaaagttttgatcaagtaaaaagaaacctcctggaagag
aaagagaatgaagtccggcttagaaaaattgcagagaacaacactgagatccagagacat
gaccacgagaaagagctggaaatcctgaaggaggagataaagagactgaaagaggacaga
gtgagtctgcagaggaaggttgaggatggggcgcaggtgaactctgacctgcaggaacag
gtcattcagctcaccaagcatgtgaaggtcatcccggagctgcgcagagatctgaacaac
ttgcagaatcagaagaacaacctggaccgtaagatgaaggaacagtcggagcaaacaaga
gctaaaacaaaggaaattgtaagacagctgcttggtggttttgttgaagaggaaaagctt
ttggggcttgttccagaagattctgagaagatttatgaactggatgatttgcaggaagcc
tttgagagtctgcaaaaagccaccaggttactggaaaaccaccagaaggagcagagagag
acatacaagtctcagatggagggcctgactctgagagtggaccaccttcagaacgagaac
agcaaactgcaaaatcttttccaggaaaaaagcaacatcaacgaggatatccgccaggaa
gtatcgaggctgagcagtgagaactcggtcataccggagctgaagctgcaagtttcagag
ctgcacagacaaaagcaggagcttgagacggttgttaaagagcagagcagcgagttagca
gaaaaaaatatggagatcagcaacattctccataagaagatcacagaagaaagctcccaa
cgcagacattttgaggagaaagccagggagctggaggagatcagagaggagctccaagta
aagatagaggagttggaggaggagaacgaacatttgaagagacagcagctgatggagggc
gaagtgaagagaaaactgagagaggagacatcgcagttaacagctgagaacatggactta
gaggagcagcttgaccagaaagaacgctggattaagaaactccacagtcaaataaagtgc
cttgaaatgtcacagaaagcaaaacaaactcctgctcttcctaaagaatatcttggcatg
ttggagtataagagggaggatgaagcaagactcattcaaaacatcataacggacctgaag
cccaaaggtgtggtggtcaatgtgattcctactctcccagccttcatcctcttcatgtgc
gtccgccatgccgactacctgaacgacgacaacaaactgaagtctctgatgaacgggatc
atccaaggggttaaaaaggtcgtcgtggctcaccacaaagactttgagtcattgtccttc
tggctctccaacacataccggctgctcaactgtctgaaacaatacagcggggaggaacag
ttcctgaagcagagtaccccgcgccagaagaagaactgcctgcagaacttcgatctgtcc
gaacacagacagatcctcagcgacctggccatacaaatctaccatcagctcatctccatc
atgcagaagacgctcacgcctgctattgttcctggtatgctggagcatgagagcttgcag
gggatttctagcatgaaaccgactggcttcaggaagcgatccagcagcttgtataatgac
tcggagacgtacaccatctcctccatcctgcaggaactctccgtgttttattctgccatg
agccaccatggcatggagcagagcctgaccacgcaggccgtcaaacagctcttctttctg
atcggagccaccaccttcaaccaaatcatgctccgcaaagacatgtgctcctgcaggaaa
ggaatgcagatcaggtgtaacatcagctacctggaggagtggctgaaggagaacgagctg
cagagctgcggtgccatcgatacgttgaggcctttggctcaggccgcctggctgctgcag
gtcaacaaatccaccgacgaagacgctaaagagattgcagaaaagtgcaccgaactcaac
cctgtccagattgtcaagattttgaactcctacacacccatcgatgattttgagaaacga
gtgacgtcatcgtttgttcgccaagttcagtccttccttcaggaatacgaaggcgccacg
cagctgatgctggacacagattatcgcttccaggtgacgtttcctttctgtccgtcttcg
acagcgttagagtctctgcaggttcccagcagccttcatctggagttcctaaccaggatc
tga
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integrated database retrieval system
